Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq577692 417 9e-112 seq3816217 219 5e-52 seq3751544 194 2e-44 seq3654882 114 1e-20 seq3172301 113 5e-20 seq658184 109 6e-19 seq3509123 102 9e-17 >seq577692 Length=2825 Score = 417 bits (462), Expect = 9e-112 Identities = 519/708 (73%), Gaps = 2/708 (0%) Strand=Plus/Plus Query 170657 TGGGACGAGTTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTT 170716 ||||| ||||||| ||||||||||| || | || ||| | || || ||||||||| Sbjct 165 TGGGAACAGTTTTGCACTTGGGTAACATCTACCAATAACCGCCTTTATGTAGGTTGGTTT 224 Query 170717 GGTGTCTTAATGATCCCATGTCTT-CTAACTGCTGCTGCTTGTTTCATTGTAGCATTCAT 170775 ||| | | |||||||| | ||| |||||||| | ||||| | |||| || | Sbjct 225 GGTATTGTGATGATCCC-TACCTTGCTAACTGCCACCATCTGTTTTGTGTTAGCTTTTGT 283 Query 170776 CGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATA 170835 ||||| ||||| || ||||| ||||| ||| | ||||| ||| | |||||| | || || Sbjct 284 AGCTGCACCTCCTGTGGATATTGACGGCATCCGCGAACCCGTTTCCGGTTCTCTGTTGTA 343 Query 170836 TGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTT 170895 || || ||||||||| | | ||||| || || ||| || || || || || ||||| Sbjct 344 CGGCAATAACATCATCACCGCCGCTGTTGTACCCAGTTCTAATGCGATTGGGTTGCACTT 403 Query 170896 CTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCA 170955 ||||||||||||||||| || | ||| || || ||| | || ||||| || || ||||| Sbjct 404 TTATCCCATCTGGGAAGCGGCAAATATTGATGAATGGCTTTATAACGGCGGCCCCTACCA 463 Query 170956 GTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACT 171015 ||| || ||||||||||||| || || || | | ||| |||||| | |||||||||| Sbjct 464 GTTGATTGTTTTCCACTTCCTAATCGGCATTTTTTGCTATATGGGTCGTGAGTGGGAACT 523 Query 171016 ATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGC 171075 || || | |||||||| | |||||||| ||| || || || |||||| |||| Sbjct 524 GTCTTATCGGTTAGGAATGCGTCCTTGGATTGCTGTTGCTTATAGCGCTCCTGTAGCTGC 583 Query 171076 AGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCC 171135 || || ||| | | || ||| | ||||||| ||||| || ||||||||| | || Sbjct 584 TGCGACGGCGGTACTGTTAGTTTATTCTATCGGTCAAGGTTCTTTTTCTGATGGTTTACC 643 Query 171136 ACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACT 171195 || || || || || || || ||||| ||||| ||| | |||||||| || || | | Sbjct 644 GCTGGGGATTTCTGGCACATTTAACTTTATGTTAGTGCTGCAAGCAGAGCATAATGTTTT 703 Query 171196 AATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGC 171255 ||||||||||||||||||| || ||||| ||| | || ||||| ||| ||| || Sbjct 704 AATGCACCCCTTCCATATGCTGGGAGTAGCTGGTGTCTTTGGTGGCGCTCTTTTCTCAGC 763 Query 171256 AATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCA 171315 |||||||||||||| |||||||||||| || | | || || ||||| | || || || Sbjct 764 TATGCACGGTTCTCTGGTGACATCTTCTTTAGTACGTGAAACCACTGAAATTGAAAGCCA 823 Query 171316 AAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGT 171363 |||| || ||| || ||||||||||||||||| ||||||||||| Sbjct 824 AAACCGGGGTTATCGCTTTGGACAAGAAGAAGAAACTTATAACATTGT 871 >seq3816217 Length=329 Score = 219 bits (242), Expect = 5e-52 Identities = 246/329 (75%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 171173 TTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATG 171232 |||||||||||||||||||| || |||||||||||||||||| || || || ||| | Sbjct 1 TTCCAAGCAGAACACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTTGCTGGTGTA 60 Query 171233 TTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGA 171292 ||||||||| | | ||| || |||||||||||| | || || ||||| | | | Sbjct 61 TTCGGTGGTGCTTTGTTCTCCGCGATGCACGGTTCTTTGGTAACTTCTTCCTTGGTGCGT 120 Query 171293 GAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACA 171352 || || || || | ||| |||||||||||| || || ||||| |||||||||||||| Sbjct 121 GAAACCACCGAAATCGAATCTCAAAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACC 180 Query 171353 TATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTC 171412 || |||||||| || ||||| || ||||||||| | | |||||||| ||||| || ||| Sbjct 181 TACAACATTGTGGCAGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATATGCTTCTTTC 240 Query 171413 AACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTA 171472 |||||| ||||| | ||||||||| | | || | || ||| || | | ||||| Sbjct 241 AACAACAGCCGTTCCCTGCACTTCTTCTTGGGTGCTTGGCCGGTAATCGGCATCTGGTTC 300 Query 171473 ACCTCTATGGGTATCTGTACAATGGCATT 171501 ||| || | ||| | | || ||||| || Sbjct 301 ACCGCTTTAGGTGTATCCACCATGGCCTT 329 >seq3751544 Length=281 Score = 194 bits (214), Expect = 2e-44 Identities = 208/275 (76%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 |||||||||||||| |||| ||| | || || || ||||| ||||| | |||||||| Sbjct 7 TGGGTAACATCCACCAACAACCGCCTTTATGTAGGCTGGTTCGGTGTTCTGATGATCCCT 66 Query 170735 TGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGAT 170794 || ||||||||| | || | ||| | || || ||||||||||| || || || Sbjct 67 ACCCTACTAACTGCTACCATCTGCTACATCATCGCTTTTATCGCTGCTCCCCCCGTGGAC 126 Query 170795 ATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCT 170854 || ||||| ||| | ||||| || || |||||| | || || || ||||||||||||||| Sbjct 127 ATTGACGGTATCCGCGAACCCGTAGCTGGTTCTCTGTTGTACGGCAACAACATCATCTCT 186 Query 170855 GGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCA 170914 ||||| || ||||| || || || || || || | |||||||| ||||| ||||||||| Sbjct 187 GGTGCGGTTGTTCCTTCCTCCAATGCGATCGGTCTGCACTTCTACCCCATTTGGGAAGCA 246 Query 170915 GCCACTATGGACGAGTGGTTGTACAACGGAGGTCC 170949 |||| |||| || ||| | |||||||| || || Sbjct 247 GCCAGCTTGGATGAATGGCTCTACAACGGTGGCCC 281 >seq3654882 Length=237 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 172457 ATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTAC 172516 ||||| || ||| |||| || || || || || | |||||||| ||| ||| | || Sbjct 221 ATCTAACACCTTCCGAGCCTTTGAACCGACCCAAGCGGAAGAAACCTATTCCATGGTGAC 162 Query 172517 TGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACA 172576 || ||| | || ||||| || || || ||||| || |||||||||||| | | ||||| Sbjct 161 AGCCAACCGCTTTTGGTCTCAAATTTTCGGTATTGCTTTTTCAAACAAACGTTGGTTACA 102 Query 172577 CTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGG 172636 |||| | ||| ||||||| || || | ||| |||||| | || || ||| | || || Sbjct 101 CTTCTTCATGCTGTTCGTTCCCGTAACAGGTCTGTGGATGTGTTCCATCGGTGTAGTGGG 42 Query 172637 TCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAG 172677 ||| || | ||||| | || || ||||| || || |||| Sbjct 41 TCTAGCTGTAAACCTGCGTGCTTATGACTTCGTGTCACAAG 1 >seq3172301 Length=157 Score = 113 bits (124), Expect = 5e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171015 TATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTG 171074 |||| ||| | | |||||| | |||||||| || ||||| ||| |||||||| | | Sbjct 157 TATCCTACCGCTTGGGAATGCGTCCTTGGATCTGCGTAGCTTACAGCGCACCTGTTGCGG 98 Query 171075 CAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGC 171134 | || |||||||||| | | || || |||| || ||||| ||||| || ||||||| Sbjct 97 CTGCTAGTGCAGTATTCTTGATCTACCCCATCGGACAAGGTTCTTTCTCCGACGGTATGC 38 Query 171135 CACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGT 171171 | || |||||||| || || |||||||||||||| || Sbjct 37 CTCTGGGTATCTCCGGAACTTTCAACTTCATGTTGGT 1 >seq658184 Length=760 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171793 GGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTG 171852 ||||||| || || ||||| ||| | ||| | ||||| || |||||| | |||||||||| Sbjct 162 GGTTTGATGTCCTCGATGACTGGCTGAAGCGTGATCGCTTTGTATTCGTAGGATGGTCTG 103 Query 171853 GTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTT 171912 || | | ||||| || ||||| || ||| | ||||| || ||| || |||||||| | Sbjct 102 GTATCCTGCTTTTCCCCTGTGCCTATCTATCTATCGGCGGATGGCTCACCGGAACTACCT 43 Query 171913 TCGTGACCTCATGGTACACACATGG 171937 | || ||||| |||||||| || || Sbjct 42 TTGTTACCTCTTGGTACACTCACGG 18 >seq3509123 Length=199 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171509 AACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGG 171568 ||||| ||||||||||||||||| || | || | | ||| | | || || ||| Sbjct 1 AACGGTTTCAACTTCAACCAATCCGTAATGGACTCCAGCGGTCGGGTAGTTAACACCTGG 60 Query 171569 GGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACAC 171628 | ||||| | ||| | || ||||| || |||||||| ||||| || | || || ||| Sbjct 61 GCTGATGTCATCAACCGCGCTAACCTGGGTATGGAAGTAATGCACGAGCGCAACGCTCAC 120 Query 171629 AACTTCCCACTAGACCTAGCATCTGCTGAGTCTACAACAGTTGCATTAACTGCACCTTCA 171688 |||||||| |||| |||| |||||||||||| | || || || ||||||| | Sbjct 121 AACTTCCCCTTAGATTTAGCTTCTGCTGAGTCTGAGCCTGTAGCTTTGGTTGCACCTCAA 180 Query 171689 ATCGGTTAATT 171699 ||||| ||||| Sbjct 181 ATCGGCTAATT 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541981457322480