Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq760737 260 1e-64 seq3830724 91.5 1e-13 >seq760737 Length=2966 Score = 260 bits (288), Expect = 1e-64 Identities = 601/900 (67%), Gaps = 22/900 (2%) Strand=Plus/Minus Query 21171 ACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTT 21230 |||||| || |||||| || || | |||||||||||| ||||| || | || |||| Sbjct 1554 ACATAACCCCTGATTTTTGGTACTCGCCAACTCTTTTTTCAAAAAAGTTAGATTTCCCTT 1495 Query 21231 CCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAAC 21290 | | ||| ||| |||||||| ||||| || |||| || ||||| || ||||||| Sbjct 1494 CAATTGAAATATTATCCATAAAGTCAAACGGGTTTTTAGCGCGAAATAACTTTTTACAAC 1435 Query 21291 CCAGTTCTGATAATAAT-CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349 ||| |||| | || || | ||||| |||||||||||||| || ||| | || | Sbjct 1434 CCAATTCT-ACAAGAAGACGGTCTGCCACAAATTCTATATACTGTTTCATAAGATCTTTA 1376 Query 21350 TTCATACCGATCAATTT-TACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408 ||||| || |||| ||| | | || | | ||| |||||| |||||| ||| ||| Sbjct 1375 TTCATTCCAATCATTTTATTCGGGCATGCCGTTTCA-AAAAAATCTTTTTCGATATCGAC 1317 Query 21409 GGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGG---GATACAATAATTGTTT 21465 || ||| ||| || || || | ||| | | || | | || | | | | Sbjct 1316 TGCGTCACCAACAATTTTGTAAATGATGGATTCATTCGGTTTTTGTTTTAAGCACTCTCT 1257 Query 21466 AAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGA 21525 ||||| | || | |||||| ||||| || ||||| || ||| |||||||| || || Sbjct 1256 AAACACAAGGCAAGAAAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTGA 1197 Query 21526 AAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCC 21585 ||| || | || || | || ||||||||||| | ||||||||| | || |||| ||| Sbjct 1196 AAAAGTGAGTCCTGGAAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGATCC 1137 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 |||| |||||||| || || ||||| || | ||| | || | ||| || Sbjct 1136 ACAAAAAAAAATGCCTTCTACACATGCAAAAGCGATTAACCTCTCTGCAAATG-AG---- 1082 Query 21646 TTTATCCAAT---ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGT 21702 ||||| || ||||| | ||||| | ||||| | ||||| ||| | || Sbjct 1081 -TTATCAGATGCAATCCAAGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGT 1023 Query 21703 ATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNN 21762 || || || || |||||| ||||||||||| | || | || Sbjct 1022 TTCGATCGCGTTAAAAAGACACATTTTTTCATCTTCGTCTTTGATATAAGTTTCAATTAA 963 Query 21763 NNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCT 21822 ||||||||||| | ||| |||||||| ||||| |||||||| || ||||| ||| | Sbjct 962 CAAGCTATACATTTCCGTATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTT 903 Query 21823 TGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882 | |||| | |||||| |||| ||||||| || | | ||||| ||| || | Sbjct 902 TATTTCTGCAATTTGAACTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCA 843 Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCT---GT 21939 |||| ||||| || || ||||| | || || ||| || || | |||| || Sbjct 842 ATCAGCATTTGCAAAGAAAGCTAATATGTACTTGAT-GAATGTCTTT--TCATCTGTAGT 786 Query 21940 TAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCT 21999 ||||| | ||| ||| |||||| |||| |||||| ||||| | | ||||||||| Sbjct 785 TAATTGGTACCAGTCTTGTAAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGA 726 Query 22000 AGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 ||| || ||||||||||| |||| | | || |||| ||||||||||| ||||| Sbjct 725 AGCCTGTGCTTTTTTATACATTGTCCAAAATTTATCATATTGTATTGGAAATAGAACAAA 666 >seq3830724 Length=343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 |||| |||||| ||||||||||| ||||| ||||| || | ||| || | ||| || ||| Sbjct 200 AACAGCAAACAGGCAAAATCACAGTGCAACCCTTCGTCGCGACTGATGAGTTCGTTGGAA 259 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 || || || || ||||| ||||||| ||||| | ||| ||||| | || || | || Sbjct 260 AACGTCAATCCCGGCATCAATCCTCGTTTTTTCATCCACAATATGGCGGCGAAAGAACCC 319 Query 21587 GAAAAGAA 21594 ||||| || Sbjct 320 GAAAAAAA 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505516645369680