Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq970977 147 1e-30 seq3884288 107 1e-18 seq3946981 100 2e-16 >seq970977 Length=2076 Score = 147 bits (162), Expect = 1e-30 Identities = 179/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 6235 AGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTA 6294 ||||||||||||| || || || || || || ||||||| |||||||| || ||| | Sbjct 381 AGGTCGAGGGTAAAGGCAATGGAATCAAGACTGTCATTGCAAACATGCCGGAGGTCAGCA 322 Query 6295 AGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTC 6354 | || || || | || | || ||||| |||| || || || || || ||||| | Sbjct 321 AAGCACTGGGCAGGCCACCAACATACCCTTGCAAATTCTTTGGCTGTGAGCTGGGCGCGC 262 Query 6355 AGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCA 6414 |||| ||||||||| ||| || ||||||| |||||| || || || || || | || Sbjct 261 AGACCCAGTTTGATTTCAAGAATGAGCGCTACATCGTCAATGGCTCTCACGACCCCAGCA 202 Query 6415 AGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATA 6474 |||| ||||| | || || | || ||||||||||||||||| || | ||||||||| | Sbjct 201 AGCTTCAGGATCTCCTGGATGTATTCATTCGCAAGTTTGTGCTCTGCCCGGAATGCGACA 142 Query 6475 ACCC 6478 |||| Sbjct 141 ACCC 138 >seq3884288 Length=419 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCC 61 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 62 ACCAATATTTAGCTTTA 78 >seq3946981 Length=677 Score = 100 bits (110), Expect = 2e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 548 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCATGGTACTTGTTATCTATCGGTCTCGT 607 Query 20007 G-GTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 608 GCCTTGTATTTAGCCTT 624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318748002236342