Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq760737 181 1e-40 seq3878943 84.2 2e-11 >seq760737 Length=2966 Score = 181 bits (200), Expect = 1e-40 Identities = 595/904 (66%), Gaps = 22/904 (2%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||| || |||||||||| || |||||| |||||||||| || || | || ||||| Sbjct 1553 CATAACCCCTGATTTTTGGTACTCGCCAACTCTTTTTTCAAAAAAGTTAGATTTCCCTTC 1494 Query 92850 CAAAGATATCGAATTCACTA-GTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | || || || || | || | || || || ||| | | |||||| || Sbjct 1493 AATTGAAATATTATCCATAAAGTCAAACGGGTTTTTAGCGCGAAATAACTTTTTACAACC 1434 Query 92908 CAACTCGTACAATAAT-CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 ||| || ||||| || | || || ||||||||||| ||||| ||| | ||| || Sbjct 1433 CAATTC-TACAAGAAGACGGTCTGCCACAAATTCTATATACTGTTTCATAAGATCTTTAT 1375 Query 92967 TCATTCCTAGAAGACG-TACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAAC 93024 ||||||| | | | | || | ||| |||| ||| ||||| ||||| | || Sbjct 1374 TCATTCCAATCATTTTATTCGGGCATGCCGTT--TCAAAAAAATCTTTTTCGATATCGAC 1317 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAAT--- 93080 || || ||| | || | | | | ||| | ||||||||| | | | Sbjct 1316 TGCGTCAC-CAACAATTTTGTAAATGATGGATTCATTCGGTTTTTGTTTTAAGCACTCTC 1258 Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 | ||| | ||| | ||| ||| |||||| |||||||||| || || || || || Sbjct 1257 TAAACACAAGGCAAGAAAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTG 1198 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 || || | ||||| | || |||| || || ||||||||||| | ||| || | Sbjct 1197 AAAAAGTGAGTCCTGGAAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGATC 1138 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 || ||||||| || ||||| || |||||| || | | | || ||||| || | Sbjct 1137 CACAAAAAAAAATGCCTTCTACACATGCAAAAGCGATTAACCTCTCTGCAAA---TGAGT 1081 Query 93261 AATTA-CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | ||| ||||| |||||||||||| || || || |||| ||||||| ||| Sbjct 1080 TATCAGATGC-AATCCAAGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTT 1022 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| |||||||| || | | || || ||| || || || || |||||| Sbjct 1021 TCGATCGCGTTAAAAAGACACATTTTTTCATCTTCGTCTTTGATATAAGTTTCAATTAAC 962 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 | ||||||||| | ||| | ||| ||||| ||||| || || || || || ||| | Sbjct 961 AAGCTATACATTTCCGTATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTTT 902 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 ||| | || || ||||| |||||| || || | |||||| || || | | Sbjct 901 ATTTCTGCAATTTGAACTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCAA 842 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT-TTCTCATC-ATCTTTAA 93557 || | |||||| ||||| ||||| | ||| || ||||| || ||||| | |||| Sbjct 841 TCAGCATTTGCAAAGAAAGCTAATATGTACTTGAT-GAATGTCTTTTCATCTGTAGTTAA 783 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | | ||| || || ||| |||| | ||| ||||| | || |||||||| || | Sbjct 782 -TTGGTACCAGTCTTGTAAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGAAG 724 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 | | ||||||||| ||||| ||| | | | |||||| |||||||||| ||||| | Sbjct 723 CCTGTGCTTTTTTATACATTGTCCAAAATTTATCATATTGTATTGGAAATAGAACAAAGC 664 Query 93678 GATT 93681 | || Sbjct 663 GTTT 660 >seq3878943 Length=409 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||| || | || ||||||| || || | ||||||| ||| || | Sbjct 255 CAGGCAAAGTCGCAGTGCATGCCCTCGTCTCTGGAAATAAGCTCATTGAAAAATAATACA 196 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 ||||| | || || |||||||||||||| | ||| | |||| || || ||||| || Sbjct 195 CCTGGCATAAGACCGCGTTTCTTGAGCCAGACTATCGCCGCAAGGCTTCCGGAAAAGAAA 136 Query 93212 ATACCTTCCACGGCTGCAAATGCCAC 93237 |||||||| |||| ||||| || || Sbjct 135 ATACCTTCTACGGGGGCAAAGGCAAC 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529238541385680