Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_008562.1 Length=162109 Score E Sequences producing significant alignments: (Bits) Value seq731098 82.4 8e-11 seq655349 82.4 8e-11 >seq731098 Length=452 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/234 (68%), Gaps = 27/234 (12%) Strand=Plus/Minus Query 41756 AACGGCAGCAATCAGGGACG-CTGCTCCAAGAACCGCCCCGCAG----------AGG--- 41801 |||||||| || |||| | |||||||| |||||||| ||||| ||| Sbjct 232 AACGGCAGTT-TCCGGGATGGCTGCTCCACGAACCGCCGCGCAGCACGCGCCNCAGGGTT 174 Query 41802 ---AGAACGATTATTATTACCATTTTCTATCCAGACACTGCCATCCGTCGGTGCGCCATT 41858 |||| |||||| ||||||| ||| |||| ||||||| || || ||| | Sbjct 173 TTGAGAAGGATTATCGTTACCATC------CCACACACCACCATCCGAGGGCGCACCAGT 120 Query 41859 ATAATTACCGTGCCAGGTATCGGCGCACCACTCCCAGACGTTCCCGTGCATATCGTAGAG 41918 || | ||||||||| || || ||||||||||| || |||||||| ||| | || | Sbjct 119 GTAGCTGTCGTGCCAGGGGTCAGCACACCACTCCCAAACATTCCCGTGGATACCATACAA 60 Query 41919 TCCGAAGGCATTAG---GGGGAAATTGTCCCACGGGAGTCGTTTCTTCTCGATA 41969 || ||||| || | | |||||| || ||||| || |||| ||| || || Sbjct 59 GCCAAAGGCGTTGGCGTGTCGAAATTTGCCGACGGGGGTGGTTTGTTCGCGGTA 6 >seq655349 Length=637 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 24564 GAACAAATATGTGTCCTTATCGATAATGTTTTCTTGACGATATTGCCACAATCAGAGCAT 24623 |||||||||||||| ||| |||| |||||||| || | | | || | |||||| Sbjct 296 GAACAAATATGTGTTCTTTCTGATAGGGTTTTCTTCACCACTTGACTGCAGTTTGAGCAT 355 Query 24624 TGTTGGCTAGTGTATTGGGGGTTTACCGCTA---TGACAAACTTCCCGTGAATTT--TTC 24678 | |||||| || || || | || |||| |||| ||| || | |||| | | Sbjct 356 TCTTGGCTGGTATAGTGAGCTGGCACAGCTACCGTGAC---CTTGCCAT--ATTTAATGC 410 Query 24679 CAAAATAGTCTAACCAATTGGTGAACATTGACCAACTCGCATCTTGAATTGATTTAGCAA 24738 ||||||| |||| |||| | || | ||||||| |||||| | ||| |||||||| | Sbjct 411 CAAAATACTCTAGCCAACCGCGAAAAGTAGACCAACCCGCATCATAAATAGATTTAGCTA 470 Query 24739 GTTTTCGGTTTTTCACCA 24756 ||||||| ||| | |||| Sbjct 471 GTTTTCGATTTCTTACCA 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492895380181680