Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3113445 111 1e-19 seq823154 82.4 6e-11 >seq3113445 Length=152 Score = 111 bits (122), Expect = 1e-19 Identities = 116/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 22260 TCTT-GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318 |||| || || ||| | | ||| ||||| ||| || | || | |||||||||| || Sbjct 152 TCTTAGAGGTTGAACCAAGCGAAACCGTCGACAATGTGAAGGCCATGATTCAAGACAGGG 93 Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378 ||||||||||||| || || || ||||||| ||||| ||||| ||||| |||||| || Sbjct 92 AGGGTATTCCACCAGACCAGCAGCGTCTTACCTTTGCTGGCAAGCAGTTGGAGGATGGCC 33 Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||| |||| || ||||||||||| ||||| Sbjct 32 ACACTCTCTCAGACTACAACATTCAGAAAGA 2 >seq823154 Length=2960 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||| | || || || | ||||||||||||||||| | | | Sbjct 2229 ATGCAAATTTT-GTCAAACCCC--ACAGGAAAGGCCATCACTCTTGAAGTGGAATCAAGC 2285 Query 22279 GATACCGTGGACGATATCAAA--CAA-AAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||||| || |||| || ||| || || ||| |||| || | ||||||||| | Sbjct 2286 GATACCAGTGAGAATATTGAAGCCAAGAAGATCCAAAACAA-GAAAGCATTCCACCCAAC 2344 Query 22336 CAACAACGTCTTATATTTGCCGG-CAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 | ||| |||||||| |||| ||| ||| | | || ||| || || |||| || || Sbjct 2345 CTACAGCGTCTTATCTTTGTCGGTAAAAAAACTTGAAGATGGCCTTACTCTCTCAGACTA 2404 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 | | |||||||| ||||| || | |||| || |||| Sbjct 2405 CTATATTCAAAATGAATCAACGCTCTATTTTGTCCTGCG 2443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399428511367330