Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq942746 131 3e-25 seq456579 129 1e-24 seq805419 123 4e-23 seq3953357 91.5 3e-13 >seq942746 Length=519 Score = 131 bits (144), Expect = 3e-25 Identities = 165/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || || || ||||| |||| ||||||| |||||||| |||||| Sbjct 151 CTATTCAATGCAATTGAAACCATGCCGCCAGTCAAACAGAAGGCCGACTGGGCACTCAAC 210 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| | | | | || || | || || || |||| || ||| | || || ||| Sbjct 211 TGGATCAACTCTGACAATGCCACCTATGGTGAAAGAGTGGTTGCTTTTGCTGCTGTAGAG 270 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GAT 42787 || ||||||||||| || | || || ||||||||||||| ||| || ||| ||| || Sbjct 271 GGTATCTTCTTCTCAGGGTCTTTTGCTGCCATCTTCTGGCTAAAGAAG-AGGGGTCTTAT 329 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| || | || ||||| || |||||||||||||| ||||||| Sbjct 330 GCCTGGTTTGACTTTCTCCAATGAACTCATCAGCAGAGACGAGG 373 >seq456579 Length=1737 Score = 129 bits (142), Expect = 1e-24 Identities = 259/375 (69%), Gaps = 18/375 (5%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 || ||||| | ||| ||||| || ||||| || || ||| | ||||| || ||||| Sbjct 731 GAAGCGCGGTTCTTTTACGGGTTTCAGATCATGATGGAAAACATCCACTCGGAAATGTAC 790 Query 42561 GCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGT--TCA 42615 | | || |||| | || ||||||| |||| | ||| |||| | | ||| Sbjct 791 GGC---CTTCTCATAGATACCTACATCCAGGATTCACGCGAAA--AACGATATTTGCTCA 845 Query 42616 AGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATC- 42674 | || || || || || ||| | || ||||| || |||||||| || | |||||| Sbjct 846 AAGCGATTGAAACTATTCCCGCGGTGAAAAAGAAAGCCGACTGGGCCCTGAGATGGATCA 905 Query 42675 --GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCA 42732 || |||| || || | |||| | ||| || || || || || |||||| || | Sbjct 906 ATGATAGTC--GA-GCCTCTTTCGCCACGAGACTCGTCGCTTTCGCCATCGTCGAAGGAA 962 Query 42733 TCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCC 42791 | ||||| || || | |||||| | || |||||| | ||| | |||| ||| ||||||| Sbjct 963 TTTTCTTTTCCGGATCGTTCGCCGCGATATTCTGGTTGAAGAA-AAGGGGTCTGATGCCC 1021 Query 42792 GGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCC 42851 || || |||||||| ||||||||||||||| | ||||||| | | || | || || || Sbjct 1022 GGTCTGACCTTCTCCAACGAACTCATCAGCCGCGACGAGGCGTTACACTGTGATTTCGCT 1081 Query 42852 TGCCTCCTGTTCTCG 42866 || | |||||||| Sbjct 1082 TGTTTATTGTTCTCG 1096 >seq805419 Length=1311 Score = 123 bits (136), Expect = 4e-23 Identities = 229/331 (69%), Gaps = 5/331 (2%) Strand=Plus/Minus Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 || ||||| |||||| |||| |||||||||||||| || ||||| ||| || | || Sbjct 1231 AGACTGGTGGCCTTTGCCGCTGTCGAGGGCATCTTTTTTTCGGGAAGCTTTGCGGCGATA 1172 Query 42762 TTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 |||||||||||| | ||| ||| |||| || || |||| || ||||| |||||| Sbjct 1171 TTCTGGCTCAAGAAACGCGGTCTCG-TGCCGGGTCTGTCCTTTTCCAACGAGCTCATCTC 1113 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 ||| ||||| || |||| | | ||||||||| | |||| | |||| | | | | Sbjct 1112 CAGAGACGATGGCATGCACTGCGGCTTTGCCTGTCATGTGTTTGGCAACCACTTGAAGAA 1053 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 ||| | | | | ||| | || | | || ||||||||||| ||||||||||| || Sbjct 1052 CAAACACACCGAAGAGAAGATCGGATCAATTATCACGGAGGCGGTGGAGATCGAAAATAT 993 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 ||| ||| | || | ||| | | | ||||||||| || | || ||| || Sbjct 992 GTT--TCA-GGAGAGCATACCCAAAGGCATCATAGGCATGAACTACCATCTGATGGGCTG 936 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCTG 43031 |||||| ||| |||||||||| ||| || Sbjct 935 GTACATAGAGTTTGTCGCCGACCGACTCTTG 905 >seq3953357 Length=757 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 || ||| ||||||| || || ||||||||||| || | || || ||||||||||| || Sbjct 249 GCATTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGATCTTTTGCAGCCATCTTCTGGATC 190 Query 42771 AAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 || ||| ||| || | || || ||||||| | |||||||| ||| ||||||||| Sbjct 189 AAAAAGAGAGGGATC-CTTCCGGGCATCACCTTTGCCAACGAACTGATCTCCAGGGACGA 131 Query 42830 GGGGCTGCATAGGGACTTTGCCTG 42853 || ||||| | |||||||| || Sbjct 130 AGGACTGCACTGCGACTTTGCTTG 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897496646884320