Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq201371 105 8e-18 seq343327 100 3e-16 seq942746 96.9 4e-15 seq456579 89.7 6e-13 >seq201371 Length=2102 Score = 105 bits (116), Expect = 8e-18 Identities = 174/245 (71%), Gaps = 16/245 (7%) Strand=Plus/Minus Query 12749 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTC 12805 |||||| || || || || | || |||||||| |||| || || |||||||| || Sbjct 1819 GCGGTTAGTAGCAGCAATAATAATAATGCCCGT---GTTACCCTCAAAACCATCCATTTC 1763 Query 12806 AGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGC 12862 ||| || | || || | ||| ||||| ||||||||||| ||| | | |||||| || Sbjct 1762 AGTTAATAACTGGTTAAGGGTCTGTTCTCGTTCATCATTACCGCCGCCAATACCA---GC 1706 Query 12863 ACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTC 12922 || || || |||||| || |||||||| ||||| || |||||||| || | |||| Sbjct 1705 ACCACGCTGGCGACCGACCGCATCAATTTCATCAATAAAGACGATACAGGGGGCAGTTTC 1646 Query 12923 ACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCC 12980 || |||| ||| | ||| || || || || || || || |||||||||||| Sbjct 1645 CTTAGC--CTTCTTAAACAAATCGCGGACCCTGGAAGCCCCAACCCCAACAAACATCTCC 1588 Query 12981 ACAAA 12985 ||||| Sbjct 1587 ACAAA 1583 >seq343327 Length=1519 Score = 100 bits (110), Expect = 3e-16 Identities = 195/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || || || || | ||||| || | | |||| ||| || || || Sbjct 1155 CGGTCAAACCGTCCCGGACGCAATAGGGCTGTATCCAACACATCAGGGCGATTAGTGGCT 1214 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || || |||| || |||| | || || |||||||| || |||| | ||| || Sbjct 1215 GCAATCACAATAATTCCCGGATTACCCTCAAATCCATCCATTTCCGTCAGTAATTGGTTA 1274 Query 12822 ATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTACCGA 12879 | ||| ||||| ||||||||||| ||| | || | |||| | ||||| ||||| Sbjct 1275 AGGGTCTGTTCCCGTTCATCATTACCGCCGCCAATTC--CCGCCCCCCGTTGGCGACCGA 1332 Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGA 12939 | || |||||||| ||||| |||| | ||| || ||| || || || ||| | Sbjct 1333 CAGCATCAATTTCATCAATAAAAATCAGACAGGGGGAATTATCCTTAGCCTTTTTAAAAA 1392 Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| ||||| | |||||||| |||||||||||||||||||| Sbjct 1393 GATCCCGCACCCGGGATGCACCGACCCCCACAAACATCTCCACAAA 1438 >seq942746 Length=519 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||||||||| ||||| || ||| ||||| ||||||| ||||| Sbjct 373 CCTCGTCTCTGCTGATGAGTTCATTGGAGAAAGTCAAACCAGGCATAAGACCCCTCTTCT 314 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 | | |||||| || ||| ||| || || ||||||||||| ||||| ||| || || | Sbjct 313 TTAGCCAGAAGATGGCAGCAAAAGACCCTGAGAAGAAGATACCCTCTACAGCAGCAAAAG 254 Query 127659 CAA 127661 ||| Sbjct 253 CAA 251 >seq456579 Length=1737 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| ||| ||||||||| || |||||| |||||| ||||| ||||||| |||| Sbjct 1061 CCTCGTCGCGGCTGATGAGTTCGTTGGAGAAGGTCAGACCGGGCATCAGACCCCTTTTCT 1002 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 |||||||||| ||||| || || || || ||||| || || || || Sbjct 1001 TCAACCAGAATATCGCGGCGAACGATCCGGAAAAGAAAATTCCTTCGAC 953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583075080267120