Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq456579 223 3e-53 seq3830724 98.7 9e-16 seq3878943 93.3 4e-14 seq3953357 91.5 1e-13 seq3695667 84.2 2e-11 >seq456579 Length=1737 Score = 223 bits (246), Expect = 3e-53 Identities = 415/601 (69%), Gaps = 14/601 (2%) Strand=Plus/Minus Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||||| || ||||| || || || || || ||||||| | | |||||||||||| Sbjct 1093 GAACAATAAACAAGCGAAATCACAGTGTAACGCCTCGTCGCGGCTGATGAGTTCGTTGGA 1034 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| |||||||| || || | ||| || | ||| ||||| |||||||| || Sbjct 1033 GAAGGTCAGACCGGGCATCAGACCCCTTTTCTTCAACCAGAATATCGCGGCGAACGATCC 974 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT-- 133062 |||||||| | || |||||| |||||||| || || | | | |||| | |||| Sbjct 973 GGAAAAGAAAATTCCTTCGACGATGGCGAAAGCGACGAGTCTCGTGGCGAAAGAGGCTCG 914 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 || | | |||||| | ||| ||||| ||||| || | ||| || || || ||| Sbjct 913 ACTATCAT--TGATCCATCTCAGGGCCCAGTCGGCTTTCTTTTTCACCGCGGGAATAGTT 856 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGA 133180 || || || || | |||| |||| || || | | | | | |||||| || |||| Sbjct 855 TCAATCGCTTTGAGCAAATATCGTTTTTC--GCGTGAATCCTGGATGTAGGTATCTATGA 798 Query 133181 G--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 | || || |||||||||||||| | ||| ||||| ||| ||||| ||||||||| | Sbjct 797 GAAGGCCG--TACATTTCCGAGTGGATGTTTTCCATCATGATCTGAAACCCGTAAAAGAA 740 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACG-CTCGACCAGATTTTCGTTGACGA 133297 |||||| || | ||| ||||| | || || ||| ||||||||||| |||| Sbjct 739 CCGCGCTTCTGGAATCTGGACTTCCCTACAAAACCGTGTCG-CCAGATTTTCGACAACGA 681 Query 133298 TGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGT 133357 | |||||||| | ||||||||||| || | ||| |||||||| |||| ||| | Sbjct 680 TCCCGTCGCTTCCCGCGAAAAAGGCGAGGATGTGGGAGATGAAATATTTCTCGCCGTCAT 621 Query 133358 TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACG 133417 | | | ||||| | | | | || |||| || || ||||| | |||||||| | Sbjct 620 TGAGACTTTCCCAATGGGGTTTATCTTTGGCGAGATCAACCTCAGCCGTCGTCCAAAAAG 561 Query 133418 ACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAA 133477 | ||||| ||| |||||||| |||||| || |||||||| || ||||| || | Sbjct 560 AAGCCTCCGCTCGCTTGTACATTTTCCACACATCTTCGTATTGTATCGGGAAAATGACGA 501 Query 133478 A 133478 | Sbjct 500 A 500 >seq3830724 Length=343 Score = 98.7 bits (108), Expect = 9e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| ||| || ||||| || || ||||| || ||||| | |||||||||||| Sbjct 198 TGAACAGCAAACAGGCAAAATCACAGTGCAACCCTTCGTCGCGACTGATGAGTTCGTTGG 257 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 || ||||| || ||||| | || |||||||| | ||| ||||||||||||||| | Sbjct 258 AAAACGTCAATCCCGGCATCAATCCTCGTTTTTTCATCCACAATATGGCGGCGAAAGAAC 317 Query 133004 CCGAAAAGAAGACGCCCTCGAC 133025 ||||||| || || || || || Sbjct 318 CCGAAAAAAATACACCTTCTAC 339 >seq3878943 Length=409 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || ||||||||||| |||| ||||||||| |||||||| || || ||| || | Sbjct 255 CAGGCAAAGTCGCAGTGCATGCCCTCGTCTCTGGAAATAAGCTCATTGAAAAATAATACA 196 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||| || |||||||| |||||||| | ||| || || | || || |||||||| Sbjct 195 CCTGGCATAAGACCGCGTTTCTTGAGCCAGACTATCGCCGCAAGGCTTCCGGAAAAGAAA 136 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAG 133043 | || || |||| || || || ||||| Sbjct 135 ATACCTTCTACGGGGGCAAAGGCAACCAG 107 >seq3953357 Length=757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 |||||||||||||| |||| || ||||||||||| || ||||||||| || || | | Sbjct 107 CAAGCAAAGTCGCAGTGCAGTCCTTCGTCCCTGGAGATCAGTTCGTTGGCAAAGGTGATG 166 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || || | || || | ||||||| ||| || ||||| || ||| || || |||||| Sbjct 167 CCCGGAAGGATCCCTCTCTTTTTGATCCAGAAGATGGCTGCAAAAGATCCAGAGAAGAAG 226 Query 133015 ACGCCCTCGACGGCCGCGAAAGC 133037 | || || ||||| || || || Sbjct 227 ATCCCTTCCACGGCGGCAAATGC 249 >seq3695667 Length=253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||| |||| || | || ||||| |||||||| || | ||| Sbjct 4 GGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGC 63 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || || ||||||||||||||| ||||| | ||||| ||| |||||||| Sbjct 64 ACACTGTCCGACTACAACATCCAGAAGGAGTCCACGCTCCATCTGGTGCTG 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475362466010880