Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3816810 113 5e-20 seq3530745 111 2e-19 seq3747720 104 3e-17 seq564260 91.5 2e-13 seq3479164 84.2 3e-11 seq760737 82.4 9e-11 >seq3816810 Length=329 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGC 7677 ||| || || ||||| ||||| || || || ||| ||| || |||||||| | | || Sbjct 2 AGCTGCTGCTGTTGGCTCATTGATGATTCGCAGAACGTTGAGTCCAGCAATGACTCCAGC 61 Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 ||||||||| ||||||||||| || || || ||||| || || || || | ||| |||| Sbjct 62 ATCTTTCGTGGCTTGTCGTTGTGAGTCATTGAAGTACGCTGGCACAGTGATGACAACGTC 121 Query 7738 CGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 |||| |||| || ||||| | ||| || | || ||||| || || || ||||| || Sbjct 122 TTTGACATTCTCTCCAAGATAAGCTTCTGCTGTCTCCTTCATCTTCGTCAGCACCATGGA 181 Query 7798 TGAAATCTCTTC 7809 |||||||| Sbjct 182 GCTGATCTCTTC 193 >seq3530745 Length=203 Score = 111 bits (122), Expect = 2e-19 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||| |||||||| || ||||||||||| || |||| || || ||||| || || Sbjct 179 ATCAAAATCCTCACCACCTAAATGTGTATCCCCAGCAGTCGACTTTACCTCAAAAATTCC 120 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || |||| | || | || || ||||| |||||||||||||||||||| || | || Sbjct 119 ATCTGAAATGGTCAATACAGACACGTCAAATGTACCACCACCCAGGTCAAAGATCAAGAC 60 Query 7576 GTTCGTATCGTCGTCTTTG-TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 ||| | || || | | ||||||||||| ||||| || | ||| || || ||||| Sbjct 59 ATTCTTCTC-TCCCGTGAGCTTCTTATCGAGTCCGTATGCAAGAGCTGCTGCTGTTGG 3 >seq3747720 Length=279 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || ||||| || ||||| || || || || ||||| | ||| ||||| |||||||| Sbjct 110 ATCAAAGTCTTCTCCGCCCAAATGGGTGTCTCCTGCGGTAGATTTCACTTCGAAGATACC 51 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAA 7565 |||||||| | |||| ||| |||||||| ||||||||||||| ||||| Sbjct 50 ATCTTCAATGGTCAACACCGACACATCAAATGTACCACCACCCAAGTCAA 1 >seq564260 Length=889 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || |||||| ||| | ||| || || |||||| || | |||||| || Sbjct 114 ATGTCCTTCTTAAATTTTCTTTTGAATTCGGCAGAGAGATGATTGACGAGTCTGTTGTCA 173 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| || ||||| || || || || || || | ||| || || ||||| || || Sbjct 174 AAGTCTTCGCCGCCCAAATGGGTGTCTCCTGCAGTAGATTTTACCTCGAAGATGCCATCT 233 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCA 7559 |||||| |||||| || |||||||| ||||||||||||| Sbjct 234 TCAATGGTTAACACTGACACATCAAATGTACCACCACCCA 273 >seq3479164 Length=193 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/180 (72%), Gaps = 7/180 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||| | ||| || || |||||||||| || |||| || || ||||| || || Sbjct 178 ATCAAAAACCTCATTTCCTAAACGTGTATCCCCGGCAGTCGACTTCACCTCAAAAATTCC 119 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || |||| |||| | || || ||||| |||||||||||||||| ||| || || | Sbjct 118 ATCTGAAATGGTTAATCA-GACACGTCAAATGTACCACCACCCAGGTTAAAGATCAGGAT 60 Query 7576 GTTCGTATCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 ||| | || || | ||| |||||||| || ||||| || | ||| || || ||||| Sbjct 59 ATTCTTCTC-TC--CCTTGAGCTTCTTATCTAGTCCGTATGCAAGAGCTGCTGCTGTTGG 3 >seq760737 Length=2966 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 115731 TATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGCTAAAATATATTTTATAAA 115790 ||||||||| || || || | ||||| | ||||| |||||||| || || || || || Sbjct 863 TATATTTTCTAATACAATGCAATCAGCATTTGCAAAGAAAGCTAATATGTACTTGATGAA 804 Query 115791 ATGT-TTTTCATTATCACTTAATTCATTCCAATCATCCATATCTTTGGAAAAGTCTATCT 115849 ||| ||||||| | |||||| | ||| || | | ||| || | || || | | Sbjct 803 -TGTCTTTTCATCTGTAGTTAATTGGTACCAGTCTTGTAAATCCTTTGTTAAATCAACTT 745 Query 115850 CTTCAGCGGTCCAATTTGACATTTGGGCCTTTTTATACAAAGTCCATAAATTTTCATGTT 115909 | | | | |||||| ||| || || |||||||||| ||||| || || |||| || Sbjct 744 CATTAACTGTCCAAAATGAAGCCTGTGCTTTTTTATACATTGTCCAAAATTTATCATATT 685 Query 115910 CTATTGGAAATA 115921 ||||||||||| Sbjct 684 GTATTGGAAATA 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603627974276880