Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq201371 120 3e-22 seq343327 109 6e-19 seq431264 82.4 9e-11 >seq201371 Length=2102 Score = 120 bits (132), Expect = 3e-22 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 9239 GCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGT 9298 ||| || || || || || | || ||| || || | | |||||||||||||| || || Sbjct 1819 GCGGTTAGTAGCAGCAATAATAATAATGCCCGTGTTACCCTCAAAACCATCCATTTCAGT 1760 Query 9299 CAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTG 9356 || | ||||||| || ||||| ||||||||||| ||| | || |||||||| Sbjct 1759 TAATAACTGGTTAAGGGTCTGTTCTCGTTCATCATTACCGCCGCCAAT--ACCAGCACCA 1702 Query 9357 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG 9416 || || || || |||||||| |||||||| ||||| ||||| || | |||| Sbjct 1701 CGCTGGCGACCGACCGCATCAATTTCATCAATAAAGACGATACAGGGGGCAGTTTCCTTA 1642 Query 9417 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | | ||| | |||||| ||||| || || || |||||||||||||||||||| Sbjct 1641 GCCTTCTTAAACAAATCGCGGACCCTGGAAGCCCCAACCCCAACAAACATCTCCACAAA 1583 >seq343327 Length=1519 Score = 109 bits (120), Expect = 6e-19 Identities = 197/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || || ||||| | || || ||| | | |||| |||||| || || Sbjct 1155 CGGTCAAACCGTCCCGGACGCAATAGGGCTGTATCCAACACATCAGGGCGATTAGTGGCT 1214 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || || |||| ||| || | | | ||||| |||||||| || |||| | ||||||| Sbjct 1215 GCAATCACAATAATTCCCGGATTACCCTCAAATCCATCCATTTCCGTCAGTAATTGGTTA 1274 Query 9312 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||||||||||||| ||| | | | || || | ||||| || | Sbjct 1275 AGGGTCTGTTCCCGTTCATCATTACCGCCGCC--AATTCCCGCCCCCCGTTGGCGACCGA 1332 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| |||||||| || | | ||| || ||| || || ||| ||| | Sbjct 1333 CAGCATCAATTTCATCAATAAAAATCAGACAGGGGGAATTATCCTTAGCCTTTTTAAAAA 1392 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 |||| || |||| || || || || ||||||||||||||||| Sbjct 1393 GATCCCGCACCCGGGATGCACCGACCCCCACAAACATCTCCACAAA 1438 >seq431264 Length=3073 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 106541 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATG 106600 || || || ||||||||||| |||||||||||| | ||||| ||| ||||| |||||| Sbjct 2621 TTGATGGTTCCCAAATTCTTCTGGTTACTCTTTCTATTGCAGTGATCTTTGTACAGCATG 2680 Query 106601 TAGGGCGTCCCCGTCTCCGTCTG 106623 || || || |||||||| ||||| Sbjct 2681 TATGGGGTTCCCGTCTCTGTCTG 2703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560715672637680