Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq559689 125 2e-23 seq396905 95.1 3e-14 seq3496919 93.3 9e-14 >seq559689 Length=1448 Score = 125 bits (138), Expect = 2e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 |||||||| || || || |||||||| |||||||||||||| |||| ||| |||| | Sbjct 85 AAAACAAGATGTAGTGTTGACTCTTTCTGAATATTGTAATCACCAAGGGTTTGGCCATAT 144 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || |||| ||| || |||||||| ||||| || |||||||||| ||||| ||||| Sbjct 145 CTAAGTTGCTGACCAGCAAAGATAAGACGTTGCTGTTCTGGAGGAACACCTTCCTTGTCC 204 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || ||||||| | ||||||||| || ||| || ||||| ||| Sbjct 205 TGTATCTTAGCTTTGACGTCTTGAATGGTGTCAGATGGTTCAACCTCAAGAGTA 258 >seq396905 Length=1799 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||| |||| || || |||| ||||| || || |||||||| || || || ||||| Sbjct 657 CAAAGCAAGATGCAGTGTGGCTTCTTTCTGTATGTTGTAATCAGCTAGGATTTGGCCATC 598 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 | ||||||||||| || |||| ||| ||||| || |||||| |||| ||||| ||||| Sbjct 597 TCGAAGCTGCTTACCAGCAAAGAGAAGACGTTGCTGTTCTGGATGAATACCTTCCTTGTC 538 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT--TTCCACTTCAAGGGTAACC 195105 || || || || || | ||||| | || || | ||| || ||||| | || Sbjct 537 CTGTATCTTAGCTTTAACACTTTCAATAGCCTC--AAGTGGTTCAACCTCAAGAGGAATT 480 Query 195106 GTCTTTCCTG 195115 || ||||||| Sbjct 479 GTTTTTCCTG 470 >seq3496919 Length=196 Score = 93.3 bits (102), Expect = 9e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| | | ||||||||||| || || |||||||| ||||| ||| ||||||| Sbjct 44 AACAAGAAGTACTGTGGACTCTTTCTGCATGTTGTAATCAGCAAGGATTCGGCCATCTTG 103 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| ||||| || |||| ||| ||||| | |||||||| ||| ||| | || || || Sbjct 104 AAGCTGTTTACCAGCAAAGACAAGACGTTGCTTGTCTGGAGCAATACCTGCCTTTTCCTG 163 Query 195051 AATTTT 195056 || || Sbjct 164 TATCTT 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1053071546760294