Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3816810 111 1e-18 seq3835962 95.1 9e-14 seq823764 95.1 9e-14 seq3578837 91.5 1e-12 seq585211 91.5 1e-12 seq2083750 86.0 5e-11 >seq3816810 Length=329 Score = 111 bits (122), Expect = 1e-18 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 |||||||| | || || ||||| | | ||| ||||| | ||||| |||| | Sbjct 198 CACCAGAAGAGATCAGCTCCATGGTGCTGACGAAGATGAAGGAGACAGCAGAAGCTTATC 139 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 |||| | | || | || | || || ||||| ||||| || || ||||||||||||| Sbjct 138 TTGGAGAGAATGTCAAAGACGTTGTCATCACTGTGCCAGCGTACTTCAATGACTCACAAC 79 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | ||||| || |||||||||||| ||||||||||| || ||||| || || ||||||| Sbjct 78 GACAAGCCACGAAAGATGCTGGAGTCATTGCTGGACTCAACGTTCTGCGAATCATCAATG 19 Query 550500 AACCTACTGCTGCTGC 550515 | || || || || || Sbjct 18 AGCCAACAGCAGCAGC 3 >seq3835962 Length=349 Score = 95.1 bits (104), Expect = 9e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 ||||||| ||||||||||| || || || || ||| | |||||||| ||||| |||||| Sbjct 98 TTAATCCTGATGAGGCTGTAGCGTACGGAGCGGCAGTCCAAGCAGCGATTCTATCTGGAG 157 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 | | || || | || || | | ||||| |||||| | || || || || ||| Sbjct 158 ATGATAGTGCTGAAGTGAAAGATGTGTTGCTTGTGGATGTTGCACCACTGTCACTCGGTA 217 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 | ||||||| ||| || | ||||| ||||| ||||| | || ||| |||||| Sbjct 218 TTGAAACAGCTGGTGGCGTCATGACAAATCTCATCGAACGTAACACTCGTATTCC 272 >seq823764 Length=5732 Score = 95.1 bits (104), Expect = 9e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 || || |||||||| ||||| ||||| || || |||||||| || ||||| ||||| ||| Sbjct 4104 GATGGGATTCCTCCGGCTCCCCGTGGTGTTCCTCAAATTGAGGTAACTTTTGATATTGAT 4045 Query 552564 GCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||||||| || |||||||| |||||| ||||| Sbjct 4044 GCCAATGGTATCTTGAATGTTACTGCTAAGGATAA 4010 >seq3578837 Length=214 Score = 91.5 bits (100), Expect = 1e-12 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 550001 ATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATT 550060 || ||||| ||||| || ||| ||||| || || | || ||||| |||||||||||| Sbjct 3 ATCGATTTGGGAACAACCTATTCCTGTGTGGGAGTGTTCCAGAATGGCAAAGTTGAAATT 62 Query 550061 ATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAA 550120 ||||| || |||||||| || ||||| || ||| ||||||| | || | || |||||| Sbjct 63 ATTGCTAACGATCAAGGAAATAGAACAACACCAAGTTATGTTGCATTTAACGACACTGAA 122 >seq585211 Length=2034 Score = 91.5 bits (100), Expect = 1e-12 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||||| ||||||| || | | |||| | |||| | |||| || || || Sbjct 1053 AAGATGAAAGAAACAGCTGAAGCATATCTTGGAGGAAAAGTCAGAGATGTGGTCATCACA 1112 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || |||||||| || ||||||||||| || || || || |||||||| ||| ||| ||| Sbjct 1113 GTGCCAGCATACTTCAATGACTCACAGCGGCAGGCCACCAAAGATGCAGGAGTTATCGCT 1172 Query 550472 GGACTTAATGTTCTTCGTATTATCA 550496 ||||| ||||| || || || |||| Sbjct 1173 GGACTAAATGTGCTACGAATCATCA 1197 >seq2083750 Length=113 Score = 86.0 bits (94), Expect = 5e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||| || || ||||||||||| ||||| | || ||||| ||||| |||||||||||| Sbjct 4 GGTATACCACCAGCTCCTCGTGGTGTACCAAAGATCGAAGTCACTTTTGATATCGATGCC 63 Query 552567 AATGGAATTTTGAATGT 552583 ||||| |||||||| || Sbjct 64 AATGGTATTTTGAACGT 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3819435350888180