Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_016564.1 Length=95299 Score E Sequences producing significant alignments: (Bits) Value seq927342 228 5e-55 seq959564 183 2e-41 seq465364 86.0 4e-12 >seq927342 Length=867 Score = 228 bits (252), Expect = 5e-55 Identities = 297/419 (71%), Gaps = 15/419 (4%) Strand=Plus/Minus Query 17342 TTGAGGGATAATTTCGCCTTCTGCTTGCCAAGCTTCCAAATACATTTCAATCACTTCTTC 17401 |||||| || | || ||||| || ||||||||| | | ||||||||||||||||||||| Sbjct 499 TTGAGGAATGACCTCACCTTCCGCCTGCCAAGCTGCTAGATACATTTCAATCACTTCTTC 440 Query 17402 GCCGTTATAAATCGCTTCCTCACGAGTTTTTCCATGAGTGCAAGGCATGACAACTCGGTC 17461 || || || || || || ||||||||||| ||||| |||||||| || || | || Sbjct 439 CCCATTGCGGATTGCCTCTTCCCGAGTTTTTCCGTGAGTACAAGGCATCACGACCTGCTC 380 Query 17462 GGCAAACTCTGGAATTGTGACAAGAAAAAGTTGATCTTCATCAGACCATTGAATAATCAT 17521 | |||||| ||||| ||||| || | Sbjct 379 AGAAAACTCGGGAATGGTGACTAGGANNNNNNNNNNNNNNNNNNNNNNNN---------- 330 Query 17522 ACTGTATTGATTCATGAGCTCTTATCCTCCTCATTGAGATATTCTAGTTCAGTCAGTAAC 17581 ||||| || |||||| |||| ||||||| | | ||| |||||||| || | Sbjct 329 --TGTATCGACTCATGAA-TCTT--CCTCCTCTCTCAACCCTTCCAGTTCAGTTAGCAGT 275 Query 17582 TTTTCTAGTTGTTTTTCGAGGTAGAGTGGCACATCATCTCCATCCTTGCCGGGGATGGTT 17641 ||||| ||||||||||| ||||| | ||||||||||||||||||| || | ||||| Sbjct 274 TTTTCCAGTTGTTTTTCTAGGTAACGGGGCACATCATCTCCATCCTGACCTGAAATGGTC 215 Query 17642 AGTGTTTTTCTCAGAAGAGGATGTCGCCAACGCTCATGACTACCCTTGCCACGTTTGGGC 17701 || ||||||| | ||||||||||||||||||||||| || ||||| || || || ||| Sbjct 214 AGGGTTTTTCCAATCAGAGGATGTCGCCAACGCTCATGGCTGCCCTTACCGCGCTTAGGC 155 Query 17702 AAGTAAATAAATCCTTCACGCAAAAACTGAGCTTTCAACTCTCGAATCTTTCTGGGCAT 17760 ||||||| ||| || | | || ||||||||||||||||||||||| | |||||| Sbjct 154 AAGTAAACAAAGCCATACTGTGCAATTTGAGCTTTCAACTCTCGAATCTTCCGGGGCAT 96 >seq959564 Length=1928 Score = 183 bits (202), Expect = 2e-41 Identities = 444/673 (66%), Gaps = 12/673 (2%) Strand=Plus/Plus Query 4692 TAAACGTTCCTGTAATTGCCTTATCTCAGTTAAGTCGTGCCGTTGAATCTCGCACTAACA 4751 |||| | || |||||| || | || ||||| || || | |||||| || ||||| || | Sbjct 1072 TAAATCTCCCAGTAATTACCCTCTCCCAGTTGAGCCGAGGCGTTGAGTCCCGCACCAATA 1131 Query 4752 AACGCCCAATGTTATCTGACTTGAGAGAGTCGGGTTGCTTGACGGGTGACAGCTTAATCA 4811 |||| || ||| | || || || |||||||| ||||| || | || || || ||| | | Sbjct 1132 AACGTCCCATGATGTCCGATTTAAGAGAGTCTGGTTGTTTATCAGGGGATAGTTTAGTAA 1191 Query 4812 CATTAGCAGATACTGGATTACAAGTACCTATTAAGGAATTGGTAGGTAAATCAGGGTTTC 4871 | |||||||||| | | |||| ||| || ||| ||||| || || ||||| | ||| Sbjct 1192 CCTTAGCAGATAGTCGTTTACCAGTTCCCATTCGAGAATTAGTTGGAAAATCTGACTTTT 1251 Query 4872 TAGTTTGGGCATTAAACGAAGAAACAATGAAACTGGAAAATGCGGTTGTTAGCAATGCTT 4931 ||| || |||| ||| || || | ||||| || ||| | | || Sbjct 1252 CTGTTGTCGCTATAAATCCAGACACTCATAACTTAGAAAAGGCTACAGTTCAGAGGGTTT 1311 Query 4932 TTTCTACTGGGGTCAAACCTGTATTTACCCTAACAACTCGGCTAGGACGAAAAATTAAGG 4991 || | || ||||| || || ||| | ||| |||||| ||||| | || | | Sbjct 1312 TTGCCACCGGGGTTAAGCCCACCTTTGACTTAAAAACTCGTTTAGGATATACCATAACAG 1371 Query 4992 CAACTGCCAATCACAAATTCTTGACAATTGAGGGTTGGAAAAGACTAGATGAGTTACATG 5051 | ||||| ||||| |||| || || | |||||| || | |||| | || | Sbjct 1372 CTACTGCTAATCATCAATTTTTTACCCTCACAGGTTGGGAACGTTTAGACAAATTGACTA 1431 Query 5052 GAGGCTGTCCTATTGCCTTACCCAGTTTTACAATAGAAAATAGTGATGTTTATTGGGATG 5111 || |||| || || || ||| |||| || || |||||||||||| Sbjct 1432 CGGGTTGTCAAATCGC---------TTGTACCGCCGAAACTA---ATATTTATTGGGATG 1479 Query 5112 AAATAGTCTCAATCATCCCTACTGGCGAGGAGGAAGTTTTCGATTTAACGGTTCCTGGAC 5171 |||| | | || || | |||| ||||| | |||||||| ||||| | Sbjct 1480 AAATTTCCGCCATTGAACCAGCCAGCGAAACCGAAGTATATGATTTAACAGTTCCCAGTT 1539 Query 5172 TACATAACTTTGTTGCCAATAACATTGTTGTTCACAACTCAACAGAACAGGATGCGGATT 5231 ||||||| ||||| || ||||| || | || |||||||| | ||||||||||| || Sbjct 1540 TACATAATTTTGTCGCTAATAATATCATCGTCCACAACTCCATCGAACAGGATGCAGACA 1599 Query 5232 TAGTGATGATGATCTATCGAGATGATTATTATAATCCCAACACTTCAGACGAGGGAATAG 5291 | || || ||| | |||||||||||||| || || || | | |||| || | Sbjct 1600 TGGTAATTATGTTATATCGAGATGATTACTACAACCCAGATTCACCAGATCGCGGTCTGA 1659 Query 5292 CTGAATTAATTTTAGCCAAACATCGCAACGGCCCCACCGGAACAGTCAAGCTATTGTTTG 5351 | ||| | ||| | ||||||| |||||||| || || ||||| |||||||| | |||| Sbjct 1660 CAGAAATTATTATCACCAAACACCGCAACGGACCTACAGGAACTATCAAGCTACTCTTTG 1719 Query 5352 ATTCTCAATTTAC 5364 | | |||| ||| Sbjct 1720 ACCCCCAATATAC 1732 Score = 147 bits (162), Expect = 1e-30 Identities = 281/412 (68%), Gaps = 19/412 (5%) Strand=Plus/Plus Query 4115 GATTTAGTTTCAATTGGTGAAACTTTAATTGATACCTTTCAAGAAATTGAAGATCGGAGC 4174 |||||||| || ||| ||||| ||||||||||||||||| | ||||||||| || Sbjct 576 GATTTAGTGTCTATTTCAGAAACCTTAATTGATACCTTTCAGGGAATTGAAGAACGTTCA 635 Query 4175 GAAAGCAAGATTCCCC----CCGGTGTCCCCTCTGGATTTTATGACCTCGATGCTATGAC 4230 ||| | ||| || | ||| | | || ||||||||||| ||||| ||||| Sbjct 636 GAAGG----ATTAGCCTTACCAGGTATTGAATGCGGGTTTTATGACCTAGATGCCATGAC 691 Query 4231 TGGAGGATTCCAACACACCGACTTAATTATCGTGGCAGGAAGACCTGCAATGGGCAAATC 4290 |||||||| |||| | || |||||||| || || || | || | ||||| ||| | Sbjct 692 CGGAGGATTTCAACGGTCTGATTTAATTATTGTAGCTGGTCGTCCGTCTATGGGAAAAAC 751 Query 4291 GAGTTTGGCTTTAAATTTTGGT----TATAACATTGCCAAAA---AAGGGTTGCCCGTTG 4343 ||||| ||| |||| || ||| |||||||||| | || || ||| Sbjct 752 CAGTTTTGCT----ATTTCCGTCGCCCATAGTATTGCCAAAAAGCATAATTTACCAATTG 807 Query 4344 CAGTCTTCAGTTTAGAGATGTCCAGAGGTCAATTAGTCCAAAGACTATTATCGAGCGAAG 4403 | || || || |||| ||||| | | || ||||| || |||| ||||| || |||| Sbjct 808 CCGTTTTTAGCCTAGAAATGTCTAAGGAACAGTTAGTTCAGCGACTGTTATCTAGTGAAG 867 Query 4404 CCAAAATTGAAAGTACCCGCATTCGTTCGGGAAACATTCAGCAAGAGGAATGGGAACCTT 4463 | | ||||||||||| || | ||||| ||| ||| |||| ||||||||||| Sbjct 868 CGAGAATTGAAAGTAATCGACTGCGTTCCGGACGTATTAGCCAAGCTGAATGGGAACCCC 927 Query 4464 TGACAACCGCAATTAGTTCCTTAGCAGAATTACCGATTTTTATTGACGACAC 4515 | || || || | | || ||||||| || ||||||||||| || || Sbjct 928 TTACTCAGGCGATCGGAACTCTATCAGAATTGCCAATTTTTATTGATGATAC 979 >seq465364 Length=2279 Score = 86.0 bits (94), Expect = 4e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 82011 ACACTATGGGGAAAATAACCACAACCCAAGACAATTTGACAGTGTTCTAACGGCCCATAA 82070 ||||||||||||||||| ||||| || || | |||||||| || || || Sbjct 1710 ACACTATGGGGAAAATAGCCACAGTTAAATGTGATGCTAGGATGTTCTAAGGGGCCGTAG 1651 Query 82071 TGTCCACGCTCTCCCGCTAGTAATCGCTTGACAATCACCTCACCAGCTTTTTCTTCAGAC 82130 ||||||||||| || ||||||| ||||| ||||| | ||| || |||| ||| ||| Sbjct 1650 TGTCCACGCTCCCCTGCTAGTAGACGCTTAACAATTATCTCCCCCGCTTCCAATTCTGAC 1591 Query 82131 GGCCAAGAATCTCGATCCTCAACAACAAACCCACTACTATAATCTTGGTGCATGGCAGCA 82190 |||||| || | | |||| ||||||| |||| || |||||||| || ||| Sbjct 1590 GGCCAATGGCTTCTACCATCAAAAACAAACTTGTCTGTATAGTCCTGGTGCATCGCTGCA 1531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 290089276810520