Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq493597 105 1e-17 seq3953357 104 4e-17 seq805419 98.7 2e-15 seq942746 93.3 7e-14 seq456579 89.7 9e-13 >seq493597 Length=1331 Score = 105 bits (116), Expect = 1e-17 Identities = 142/191 (74%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 213775 ATGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCC 213833 ||| ||| ||||| || | ||||||||| | | | ||| ||||||| |||||||| || Sbjct 324 ATGTGGG-CACATCAGACACCAGTCCCCATTCTTTTCT-ACTCTCTTCATGAACAAATCT 381 Query 213834 GGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTG 213893 || | ||||| ||| ||||| ||||| | ||| | || ||| || | |||||| Sbjct 382 GGAATCCACAAGGCGTAGAACAAGTCCCGTGCCCTGTTTTCCTCCGACCCTGTGTTTTTC 441 Query 213894 C-GCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGC 213952 |||| || || |||||||||||||| || ||||| || |||| |||||| ||||| || Sbjct 442 TTGCAG-TCCAGGAAGTCAAAGATGTCTGCATGCCATGGTTCCAAGTAGATTGCAAAAGC 500 Query 213953 GCCCGGCCTCT 213963 || || |||| Sbjct 501 ACCGGGTCTCT 511 >seq3953357 Length=757 Score = 104 bits (114), Expect = 4e-17 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| || |||||||| | ||||| |||||||||| | ||| || |||||| | Sbjct 101 AGAGCA--CAAGCAAAGTCGCAGTGCAGTCCTTCGTCCCTGGAGATCAGTTCGTTGGCAA 158 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || || || || | || ||| |||| ||||| |||||| || || || ||||| |||| Sbjct 159 AGGTGATGCCCGGAAGGATCCCTCTCTTTTTGATCCAGAAGATGGCTGCAAAAGATCCAG 218 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||||| || ||||| || || || || Sbjct 219 AGAAGAAGATCCCTTCCACGGCGGCAAATGC 249 >seq805419 Length=1311 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 48099 GTTTGTTGCGCAGGTGCTTGGCATAGAGCATG-CAGGCAAAGTCCCTGTGCAAGCCTTCG 48157 ||||||| || ||| ||| || | | |||| ||||||||| | | ||||| ||| ||| Sbjct 1048 GTTTGTTCTTCAAGTGGTTGCCAAACA-CATGACAGGCAAAGCCGCAGTGCATGCCATCG 1106 Query 48158 TCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGC 48217 || | | ||||||| ||||||| ||| | ||||| |||| || || | | |||||| Sbjct 1107 TCTCTGGAGATGAGCTCGTTGGAAAAGGACAGACCCGGCACGAGACCGCGTTTCTTGAGC 1166 Query 48218 CAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| || ||||| || || || || ||||||||||| || || || || || Sbjct 1167 CAGAATATCGCCGCAAAGCTTCCCGAAAAAAAGATGCCCTCGACAGCGGCAAAGGC 1222 >seq942746 Length=519 Score = 93.3 bits (102), Expect = 7e-14 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | ||||||||| | |||||||| | ||||||||| | ||||||| || Sbjct 371 TCGTCTCTGCTGATGAGTTCATTGGAGAAAGTCAAACCAGGCATAAGACCCCTCTTCTTT 312 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || || || ||||| || ||||||||||| ||||| || || || || || Sbjct 311 AGCCAGAAGATGGCAGCAAAAGACCCTGAGAAGAAGATACCCTCTACAGCAGCAAAAGCA 252 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA---GATCCAGGAAAGCGCCCAGTCT 48331 | || || || | | | | ||||| || ||||||| || |||||||| Sbjct 251 ACCACTCTTTCACC---ATAGGTGGCATTGTCAGAGTTGATCCAGTTGAGTGCCCAGTCG 195 Query 48332 GCCTTCTTCTTGA 48344 ||||||| |||| Sbjct 194 GCCTTCTGTTTGA 182 >seq456579 Length=1737 Score = 89.7 bits (98), Expect = 9e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || || || || | ||| || | ||||| ||||||||||| ||||||||||| ||| Sbjct 1083 CAAGCGAAATCACAGTGTAACGCCTCGTCGCGGCTGATGAGTTCGTTGGAGAAGGTCAGA 1024 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | ||||| | || | |||||| || || ||||| || || || ||||| Sbjct 1023 CCGGGCATCAGACCCCTTTTCTTCAACCAGAATATCGCGGCGAACGATCCGGAAAAGAAA 964 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || || || || ||||| ||| ||| ||| ||||||| || | || | Sbjct 963 ATTCCTTCGACGATGGCGAAAGCGACGAGTCTCGTGGCGAAAGAGGCTCGACTATCATTG 904 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTT 48342 ||||| || |||||||| || ||||| || Sbjct 903 ATCCATCTCAGGGCCCAGTCGGCTTTCTTTTT 872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 885325489466880