Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq982775 178 3e-40 >seq982775 Length=28252 Score = 178 bits (196), Expect = 3e-40 Identities = 442/665 (66%), Gaps = 12/665 (2%) Strand=Plus/Minus Query 593 CCGCAACCGCAAACAGCAGTTGAATGGGCAGATGAGAATTATTATCTCCCGAAAGAGTCT 652 ||| ||||| || |||| || ||||| || ||||||| |||||| | | || ||| Sbjct 2198 CCGGAACCGAAATCAGCTAGCGAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAATCT 2139 Query 653 GCCTACCAGGAAGGGCGCTGGGAAACACTGCCATTTCAGCGTGCAATTATGAATGCGATG 712 | || || ||||| || ||| |||| |||| || || || || | || || ||| Sbjct 2138 TCATATCACGAAGGTCGTTGGAAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAATG 2079 Query 713 GGTAATGACTATATTCGCGAGGTGAATGTCGTTAAATCGGCTCGTGTCGGCTACTCAAAA 772 || || || || | ||||| || || || |||||||| | || ||| | || Sbjct 2078 GGCTCGGATGCAATCCGAGTTGTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCAAG 2019 Query 773 ATGTTGCTCGGCGTTTACGCATATTTCATCCAACATAAACAGCGTAACTCCCTAATATGG 832 ||| | |||| | | || || | | | | || || | || ||| || | | | Sbjct 2018 ATGCTCCTCGCTGCTATTGCGTACTACGTAGAGCACAAGCGTCGGAACG---TACTGTCG 1962 Query 833 TTA---CCAACCGACGGTGATGCTGAAAACTTCATGAAGTCTCATGTAGAACCGACCATT 889 || || ||||| || ||||| || || || |||| || || | | ||| Sbjct 1961 TTCTCGCCGACCGATACCGACGCTGAGAAGTTTTCAAAAACTCACGTTGATACAGCAATT 1902 Query 890 CGTGATATTCCGACGTTGCTGGCGCTTGCTCCCTGGTACGGTAAAAAACACCGGGACAAT 949 |||||| |||||||| || || |||||| || |||| ||| | || ||||| || || Sbjct 1901 CGTGATGTTCCGACGCTGAAGGAGCTTGCCCCTTGGTGCGGAATGAAGCACCGAGATAAC 1842 Query 950 ACGCT-GAGCATGAAGCGTTTCTCGAATGGTCGTGGTTTCTGGTGCCTGGGCGGTAAGGC 1008 ||| | || || |||||| ||||| || || || | | ||||||||||| Sbjct 1841 ACGTTAGATCA-GAAGCGGTTCTCTAACGGCAAGCAATTATTCATACGCGGCGGTAAGGC 1783 Query 1009 TGCAAAAAACTACCGTGAAAAATCAGTTGATGTGGCTGGCTACGACGAGCTCGCCGCTTT 1068 || | ||||||||||||| || | |||||| | | || |||||||| ||||| || Sbjct 1782 GGCTAGGAACTACCGTGAAACGTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGCATT 1723 Query 1069 CGATGATGACATCGAGAAAGAAGGTTCTCCCACCTTTCTGGGTGATAAGCGTATTGAGGG 1128 |||| | || || || |||||||| || || ||| ||| |||||||||||| |||| || Sbjct 1722 CGATAAGGATATTGAAAAAGAAGGATCGCCGACCACTCTCGGTGATAAGCGTCTTGAAGG 1663 Query 1129 TTC--TGTATGGCCGAAATCCATTCGCGGATCTACACCGAAAGTCAAAGGTATGTGCCAG 1186 ||| ||| || || || || || || || ||||| ||| | || |||||| Sbjct 1662 TTCGACGTACGG--TAAGTCGATACGTGGTTCAACACCAAAAATTCGCGGCGAATGCCAG 1605 Query 1187 ATAGAAAGAGCTGCTAAGGAGTCTGAACATTTTCTTCGGTTCCATGTTCCATGCCCACAC 1246 || |||| ||||||| ||||| || | | || | || | || || ||||| ||| Sbjct 1604 ATTGAAAATGCTGCTAGCGAGTCCGAGTACTACTTTAGATTTCGGGTCCCGTGCCCGCAC 1545 Query 1247 TGTGG 1251 || || Sbjct 1544 TGCGG 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135192614676708