Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq982775 239 1e-58 >seq982775 Length=28252 Score = 239 bits (264), Expect = 1e-58 Identities = 443/644 (69%), Gaps = 12/644 (2%) Strand=Plus/Minus Query 614 GAATGGGCGGATGCTAATTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGG 673 || ||||| || | |||| ||||| | | ||||| |||| || ||||| || ||| Sbjct 2177 GAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAATCTTCATATCACGAAGGTCGTTGG 2118 Query 674 GAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAG 733 |||| |||| ||| || ||| ||| | || || |||||| || ||||| | Sbjct 2117 AAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAATGGGCTCGGATGCAATCCGAGTT 2058 Query 734 GTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCC 793 ||||| ||||| ||||| || || | ||||| |||| ||||| || | || | ||| Sbjct 2057 GTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCAAGATGCTCCTCGCTGCTATTGCG 1998 Query 794 TACTTTATAGAGCATAAGCAGCGCAACACCCTTATCTGGTTGCCGACGGATGGTGATGCC 853 |||| ||||||| |||| || ||| || | | |||||| ||| || || Sbjct 1997 TACTACGTAGAGCACAAGCGTCGGAACGTACTGTCGTTCTCGCCGACCGATACCGACGCT 1938 Query 854 GAGAACTTTATGAAAACCCACGTTGAGCCGACTATTCGTGATATTCCGTCGCTGCTGGCG 913 ||||| ||| ||||| |||||||| | | ||||||||| ||||| ||||| || | Sbjct 1937 GAGAAGTTTTCAAAAACTCACGTTGATACAGCAATTCGTGATGTTCCGACGCTGAAGGAG 1878 Query 914 CTGGCCCCGTGGTATGGCAAAAAGCACCGGGATAACACGCTC-ACCATGAAGCGTTTCAC 972 || ||||| |||| || | |||||||| ||||||||| | | || |||||| ||| | Sbjct 1877 CTTGCCCCTTGGTGCGGAATGAAGCACCGAGATAACACGTTAGATCA-GAAGCGGTTCTC 1819 Query 973 TAATGG---GCGTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTACCGTGAAAA 1029 ||| || || ||| || |||||||| ||||| | ||||||||||||| Sbjct 1818 TAACGGCAAGCAATTATTCATACGC---GGCGGTAAGGCGGCTAGGAACTACCGTGAAAC 1762 Query 1030 GTCGGTGGATGTGGCGGGTTATGATGAACTTGCTGCTTTTGATGATGATATTGAACAGGA 1089 ||| | ||||| | | |||||| || || || || || ||| | ||||||||| | || Sbjct 1761 GTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGCATTCGATAAGGATATTGAAAAAGA 1702 Query 1090 AGGCTCTCCGACGTTCCTGGGTGACAAGCGTATTGAAGGCTCG--GTCTGGCCAAAGTCC 1147 ||| || ||||| || ||||| |||||| ||||||| ||| || || ||||| Sbjct 1701 AGGATCGCCGACCACTCTCGGTGATAAGCGTCTTGAAGGTTCGACGTACGG--TAAGTCG 1644 Query 1148 ATCCGTGGCTCCACGCCAAAAGTGAGAGGCACCTGTCAGATTGAGCGTGCAGCCAGTGAA 1207 || ||||| || || |||||| | | ||| || |||||||| ||| || || || Sbjct 1643 ATACGTGGTTCAACACCAAAAATTCGCGGCGAATGCCAGATTGAAAATGCTGCTAGCGAG 1584 Query 1208 TCCCCGCATTTTATGCGTTTTCATGTTGCCTGCCCGCATTGCGG 1251 ||| | | | | | |||| || | |||||||| ||||| Sbjct 1583 TCCGAGTACTACTTTAGATTTCGGGTCCCGTGCCCGCACTGCGG 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144074949669000