Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq982775 205 3e-48 >seq982775 Length=28252 Score = 205 bits (226), Expect = 3e-48 Identities = 449/666 (67%), Gaps = 14/666 (2%) Strand=Plus/Minus Query 593 CCAGAACCGCAAACAGCGGTTGAATGGGCAGATGAGAATTACTATCTCCCGAAAGAGTCT 652 || |||||| || |||| || ||||| || ||||||| ||||| | | || ||| Sbjct 2198 CCGGAACCGAAATCAGCTAGCGAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAATCT 2139 Query 653 GCCTACCAGGAAGGGCGCTGGGAAACACTGCCATTTCAGCGTGCAATTATGAATGCGATG 712 | || || ||||| || ||| |||| |||| || || || || | || || ||| Sbjct 2138 TCATATCACGAAGGTCGTTGGAAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAATG 2079 Query 713 GGCAATGACTATATCCGCGAAGTGAATGTCGTTAAATCTGCTCGTGTCGGCTACTCAAAA 772 ||| || ||||| | ||||| || || || || ||||| | || ||| | || Sbjct 2078 GGCTCGGATGCAATCCGAGTTGTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCAAG 2019 Query 773 ATGTTGCTCGGCGTTTACGCATATTTCATCCAGCATAAACAGCGTAACTCCCTAATATGG 832 ||| | |||| | | || || | | | |||| || | || ||| || | | | Sbjct 2018 ATGCTCCTCGCTGCTATTGCGTACTACGTAGAGCACAAGCGTCGGAACG---TACTGTCG 1962 Query 833 TT---GCCAACCGACGGTGACGCTGAAAACTTCATGAAGTCTCATGTCGAACCGACCATT 889 || ||| ||||| |||||||| || || || |||| || || | | ||| Sbjct 1961 TTCTCGCCGACCGATACCGACGCTGAGAAGTTTTCAAAAACTCACGTTGATACAGCAATT 1902 Query 890 CGTGATATTCCGACGCTGTTGGCGCTTGCTCCTTGGTACGGCAAAAAACACCGGGACAAT 949 |||||| ||||||||||| || |||||| ||||||| ||| | || ||||| || || Sbjct 1901 CGTGATGTTCCGACGCTGAAGGAGCTTGCCCCTTGGTGCGGAATGAAGCACCGAGATAAC 1842 Query 950 ACGCTTAGCAT--GAAGCGTTTCTCAAATGGTCGTGGTTTCTGGTGCCTGGGCGGTAAGG 1007 ||| |||| || |||||| ||||| || || || | | |||||||||| Sbjct 1841 ACG-TTAG-ATCAGAAGCGGTTCTCTAACGGCAAGCAATTATTCATACGCGGCGGTAAGG 1784 Query 1008 CTGCAAAAAACTACCGTGAAAAATCCGTTGATGTGGCTGGCTACGACGAGCTTGCCGCTT 1067 | || | ||||||||||||| |||| |||||| | | || |||||||| ||||| | Sbjct 1783 CGGCTAGGAACTACCGTGAAACGTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGCAT 1724 Query 1068 TCGATGATGACATCGAGAAAGAAGGTTCTCCCACCTTTCTGGGAGATAAGCGTATTGAGG 1127 ||||| | || || || |||||||| || || ||| ||| || ||||||||| |||| | Sbjct 1723 TCGATAAGGATATTGAAAAAGAAGGATCGCCGACCACTCTCGGTGATAAGCGTCTTGAAG 1664 Query 1128 GTTC--TGTATGGCCAAAATCCATTCGCGGCTCTACACCGAAAGTCAAAGGTACGTGCCA 1185 |||| ||| || || || || || || || ||||| ||| | || ||||| Sbjct 1663 GTTCGACGTACGG--TAAGTCGATACGTGGTTCAACACCAAAAATTCGCGGCGAATGCCA 1606 Query 1186 GATAGAAAGGGCTGCTAAGGAGTCAGAACATTTTCTTCGGTTCCATGTTCCATGCCCACA 1245 ||| |||| ||||||| ||||| || | | || | || | || || ||||| || Sbjct 1605 GATTGAAAATGCTGCTAGCGAGTCCGAGTACTACTTTAGATTTCGGGTCCCGTGCCCGCA 1546 Query 1246 CTGCGG 1251 |||||| Sbjct 1545 CTGCGG 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138214377113152