Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq823764 111 1e-18 seq559689 102 5e-16 seq396905 100 2e-15 seq3816810 91.5 9e-13 seq3950162 87.8 1e-11 seq3148421 87.8 1e-11 seq3578837 86.0 4e-11 >seq823764 Length=5732 Score = 111 bits (122), Expect = 1e-18 Identities = 102/127 (80%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 476058 ATAATAACAA-ACTT--GGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAG 476114 || ||||||| | || |||||||| || || || |||||||| |||||| | || | Sbjct 4136 ATGATAACAAGAGTTTGGGAACTTTCCGCCTCGATGGGATTCCTCCGGCTCCCCGTGGTG 4077 Query 476115 TTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTT 476174 ||||||||||||| || ||||||||||||||||| |||||||| | |||||||||||| Sbjct 4076 TTCCTCAAATTGAGGTAACTTTTGATATTGATGCCAATGGTATCTTGAATGTTACTGCTA 4017 Query 476175 GTGATAA 476181 ||||| Sbjct 4016 AGGATAA 4010 >seq559689 Length=1448 Score = 102 bits (112), Expect = 5e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCA 480623 |||||||| ||||| ||||| || ||| |||||| | || ||| | || | | Sbjct 88 ACAAGATGTAGTGTTGACTCTTTCTGAATATTGTAATCACCAAGGGTTTGGCCATATCTA 147 Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 ||||||| |||||||| ||||||||||| || || ||||||| ||||||||||| || Sbjct 148 AGTTGCTGACCAGCAAAGATAAGACGTTGCTGTTCTGGAGGAACACCTTCCTTGTCCTGT 207 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 ||||| |||||| ||| ||| || |||| Sbjct 208 ATCTTAGCTTTGACGTCTTGAATGGTGTCAG 238 >seq396905 Length=1799 Score = 100 bits (110), Expect = 2e-15 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 ||||||| ||||| |||||| | || ||||||||||| || | |||| || Sbjct 652 CAAGATGCAGTGTGGCTTCTTTCTGTATGTTGTAATCAGCTAGGATTTGGCCATCTCGAA 593 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | ||||| |||||||| | ||||||||| || || ||| |||| ||||||||||| || | Sbjct 592 GCTGCTTACCAGCAAAGAGAAGACGTTGCTGTTCTGGATGAATACCTTCCTTGTCCTGTA 533 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATC-AGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 |||| ||| ||| |||||||| || |||| || | ||||| | ||| ||||| Sbjct 532 TCTTAGCTTTAACACTTTCAATAGCCTCAAGTG-GTTCAACCTCAAGAGGAATTGTTTTT 474 Query 480744 CC 480745 || Sbjct 473 CC 472 Score = 91.5 bits (100), Expect = 9e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || | |||| ||| | ||| |||||||| | || || |||| || || Sbjct 1216 ACGAAGGCGCAAAACAATATGGATTGTGCTTTCTTTCTGTATGTTGTAGTCAGACAGGGT 1157 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || || || |||||| || | |||||||| |||| ||| || || || |||||||| || Sbjct 1156 TCGGTCATTTTCAAGCTGATCACCAGCAAAGATAAAACGCTGCTGGTCTGGAGGAATACC 1097 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||| || ||||| Sbjct 1096 TTCCTTGTCCTGTATCTT 1079 >seq3816810 Length=329 Score = 91.5 bits (100), Expect = 9e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 ||||||||| | | || | || | || || ||||| ||||| || || ||||| || Sbjct 142 TATCTTGGAGAGAATGTCAAAGACGTTGTCATCACTGTGCCAGCGTACTTCAATGACTCA 83 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 ||||| ||||| || |||||||| ||| ||||| || || || ||| | || || || Sbjct 82 CAACGACAAGCCACGAAAGATGCTGGAGTCATTGCTGGACTCAACGTTCTGCGAATCATC 23 Query 474833 AATGAACCAACAGCAGCCGC 474852 ||||| ||||||||||| || Sbjct 22 AATGAGCCAACAGCAGCAGC 3 >seq3950162 Length=713 Score = 87.8 bits (96), Expect = 1e-11 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 474657 CACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAA-ACAAACCGCGAGCTCATAT 474715 |||||||| | ||||| || ||||| | || |||| | | || || ||| |||| Sbjct 255 CACCGGAAGAGATTTCCTCCATGGTACT-GCGGAAATTAGCAGAAGAAGCCAGCCGATAT 197 Query 474716 CTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAA 474775 || || | || || |||| || ||||||||||| || || |||||||||||||||||| Sbjct 196 CTAGGGGAGGAGGTGACTGGGGCGGTAATTACTGTACCCGCCTATTTTAATGATTCTCAA 137 Query 474776 CGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAAT 474835 | || || || || || || | |||||| || | | || ||| ||| | ||| Sbjct 136 AGACAGGCGACCCGCGACGCTGGGAAAATTGCCGGATTAGAGGTAAAACGGATTCTCAAT 77 Query 474836 GAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 ||||| || || || | || || ||||| || Sbjct 76 GAACCGACGGCGGCTTCCCTCGCCTATGGACT 45 >seq3148421 Length=155 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/134 (76%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 480616 TATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCT 480675 ||||| |||||| |||||||| ||||||||||| || || || ||||| ||||||| Sbjct 2 TATCT--AAGTTGGGCACCAGCAAAGATAAGACGTTGCTGTTCTGGTGGAATACCTTCCT 59 Query 480676 TGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTA 480734 |||| || ||||| | ||||| |||||| || |||| || || || ||||| ||| Sbjct 60 TGTCCTGTATCTTAGCTGTGACATTTTCAATGGTGTCAGATGGGTTAA-CCTCAAGAGTA 118 Query 480735 ATAGTTTTACCGGT 480748 || ||||| || || Sbjct 119 ATTGTTTTTCCTGT 132 >seq3578837 Length=214 Score = 86.0 bits (94), Expect = 4e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474338 ATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATA 474397 || ||||| ||||| || || ||||| | || | || ||||| ||||| ||||| Sbjct 3 ATCGATTTGGGAACAACCTATTCCTGTGTGGGAGTGTTCCAGAATGGCAAAGTTGAAATT 62 Query 474398 ATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAA 474457 ||||| || || ||||| ||||||||||||||| |||||| | |||| || |||||| Sbjct 63 ATTGCTAACGATCAAGGAAATAGAACAACACCAAGTTATGTTGCATTTAACGACACTGAA 122 Query 474458 CATCTTATTGGAGATGCTGC 474477 || || ||||| || || Sbjct 123 AGACTGATCGGAGAGGCAGC 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3097960330915736