Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq201371 111 2e-19 seq343327 100 3e-16 seq431264 86.0 7e-12 >seq201371 Length=2102 Score = 111 bits (122), Expect = 2e-19 Identities = 169/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 |||||||||||||||||||| || || || ||||| |||||| | ||| | | || Sbjct 1583 TTTGTGGAGATGTTTGTTGGGGTTGGGGCTTCCAGGGTCCGCGATTTGTTTAAGAAGGCT 1642 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 |||| | || ||||| ||||| |||||||| ||||||||||| || || || Sbjct 1643 AAGGAAACTGCCCCCTGTATCGTCTTTATTGATGAAATTGATGCGGTCGGTCGCCAGCGT 1702 Query 175516 AGCGCTGGTGGTATGCCAGC--AAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||||| || | || ||||| || ||||||| || |||| || || | | Sbjct 1703 GGTGCTGGT--ATTGGCGGCGGTAATGATGAACGAGAACAGACCCTTAACCAGTTATTAA 1760 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 | || |||||||| ||||| | | || |||||| | ||||||| || ||||| ||| Sbjct 1761 CTGAAATGGATGGTTTTGAGGGTAACACGGGCATTATTATTATTGCTGCTACTAACCGC 1819 >seq343327 Length=1519 Score = 100 bits (110), Expect = 3e-16 Identities = 195/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| || || ||||| |||| || ||||| ||| ||| || Sbjct 1438 TTTGTGGAGATGTTTGTGGGGGTCGGTGCATCCCGGGTGCGGGATCTTTTTAAAAAGGCT 1379 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || ||| | | || |||||||| |||||||| || || ||||| Sbjct 1378 AAGGATAATTCCCCCTGTCTGATTTTTATTGATGAAATTGATGCTGTCGGTCGCCAACGG 1319 Query 175516 AGCGCTGGTGGTATGCCAGCA--AATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | || || | | | || ||||| || | ||||| || |||| ||| |||| | Sbjct 1318 GGGGCGGGAATT--GGCGGCGGTAATGATGAACGGGAACAGACCCTTAACCAATTACTGA 1261 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | || |||||||| ||||| | | | || ||| | || ||||| |||||||||||| Sbjct 1260 CGGAAATGGATGGATTTGAGGGTAATCCGGGAATTATTGTGATTGCAGCCACTAATCGCC 1201 Query 175634 TGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 ||| | | ||| ||||| | || ||||| || ||||| || Sbjct 1200 CTGATGTGTTGGATACAGCCCTATTGCGTCCGGGACGGTTTGACCG 1155 >seq431264 Length=3073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | ||| | || || | ||||| ||||| ||||| ||||| ||||| ||||| ||| Sbjct 2724 TGGTACGCTGTCCTGGAAGCCCAGACAGAGACGGGAACCCCATACATGCTGTACAAAGAT 2665 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || | ||||||||||| |||||||||||||| ||||| || || || ||| Sbjct 2664 CACTGCAATAGAAAGAGTAACCAGAAGAATTTGGGAACCATCAAATGCAGTAACCTATGC 2605 Query 75998 ACGGA 76002 || || Sbjct 2604 ACTGA 2600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566977644932160