Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq577692 284 3e-72 seq3816217 183 9e-42 seq3509123 82.4 2e-11 >seq577692 Length=2825 Score = 284 bits (314), Expect = 3e-72 Identities = 498/714 (70%), Gaps = 12/714 (2%) Strand=Plus/Minus Query 26162 ACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTG--TGAGACTT 26219 ||||| ||||| || ||||| ||||| ||||| ||| || || || | | || Sbjct 871 ACAATGTTATAAGTTTCTTCTTCTTGTCCAAAGCGATAACCCCGGTTTTGGCTTTCAATT 812 Query 26220 CCTCTGTCGTTTCT-GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAA 26278 || || ||||| | | ||| || || || |||| | ||||||||||| | |||| Sbjct 811 --TCAGTGGTTTCACGTACTAAA-GAAGATGTCACCAGAGAACCGTGCATAGCTGAGAAA 755 Query 26279 AGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTA 26338 ||||| ||||| || || ||||| || || ||||||||| |||||||| | | |||| Sbjct 754 AGAGCGCCACCAAAGACACCAGCTACTCCCAGCATATGGAAGGGGTGCATTAAAACATTA 695 Query 26339 TGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCA 26398 || |||||||| | || |||||||||||||| || ||||| || || || || | ||| Sbjct 694 TGCTCTGCTTGCAGCACTAACATAAAGTTAAATGTGCCAGAAATCCCCAGCGGTAAACCA 635 Query 26399 TCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGT 26458 ||| |||| ||||| |||| || ||||||||| | || || || || | || Sbjct 634 TCAGAAAAAGAACCTTGACCGATAGAATAAACTAACAGTACCGCCGTCGCAGCAGCTACA 575 Query 26459 GGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCAC 26518 || || |||| |||||| ||||| || | |||||||| | ||||| ||||||||| Sbjct 574 GGAGCGCTATAAGCAACAGCAATCCAAGGACGCATTCCTAACCGATAAGACAGTTCCCAC 515 Query 26519 TGTCTCCCTGCATAT-GCTGCTACT-CCTATTAAGAAGTGGAAGATAATGAGTTGATATG 26576 | | || ||||| || | | || |||| ||||||||| | ||| | || || | Sbjct 514 TCACGACC--CATATAGCAAAAAATGCCGATTAGGAAGTGGAAAACAATCAACTGGTAGG 457 Query 26577 GTCCGCCATTGTATAGCCACTCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGT 26635 | ||||| || || ||||| || || | | |||| ||||||||||| || ||||| || Sbjct 456 GGCCGCCGTTATAAAGCCATTCATCAATATTTGCC-GCTTCCCAGATGGGATAAAAGTGC 398 Query 26636 AGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATT 26695 | || || || ||||| ||| || || || | | || || || || ||||||| Sbjct 397 AACCCAATCGCATTAGAACTGGGTACAACAGCGGCGGTGATGATGTTATTGCCGTACAAC 338 Query 26696 AACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAG 26755 | || |||||||| || || || ||||| || ||||| ||||| ||||| || | || Sbjct 337 AGAGAACCGGAAACGGGTTCGCGGATGCCGTCAATATCCACAGGAGGTGCAGCTACAAAA 278 Query 26756 GCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCAT 26815 || | | |||||| | ||||| | || ||| || ||||| | | || ||||| Sbjct 277 GCTAACACAAAACAGATGGTGGCAGTTAGCAAGGTAGGGATCATCACAATACCAAACCAA 218 Query 26816 CCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAACCTCTCCCAA 26869 || ||||| || ||||| | ||| ||| ||||| |||||| |||||| Sbjct 217 CCTACATAAAGGCGGTTATTGGTAGATGTTACCCAAGTGCAAAACTGTTCCCAA 164 >seq3816217 Length=329 Score = 183 bits (202), Expect = 9e-42 Identities = 240/330 (73%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 26024 AATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCA 26083 || ||||| ||| | | ||| | || || | ||| ||||| | |||||||||| | | Sbjct 329 AAGGCCATGGTGGATACACCTAAAGCGGTGAACCAGATGCCGATTACCGGCCAAGCACCC 270 Query 26084 AGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCA 26143 | ||||| || || ||||||||||| || ||| ||||| || || || | | || Sbjct 269 AAGAAGAAGTGCAGGGAACGGCTGTTGTTGAAAGAAGCATATTGGAAGATCAGGCGACCG 210 Query 26144 AAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCA 26203 ||||| ||||| || || ||||| || || || ||||| ||||| || || || || || Sbjct 209 AAGTAACCGTGAGCTGCCACAATGTTGTAGGTTTCTTCTTCTTGACCGAATTTGTAACCG 150 Query 26204 TAATTCTGTGAGACTTCCTCTGTCGTTTCT-GCAATAAGTGAGGAAGTAACCAAACTTCC 26262 || || || || | || || ||||| ||| ||| || ||||| |||||| || Sbjct 149 TAGTTTTGAGATTCGATTTCGGTGGTTTCACGCACCAAG-GAAGAAGTTACCAAAGAACC 91 Query 26263 GTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGG 26322 |||||| || | ||| | ||| |||||||| || |||||||| || ||||||||| || Sbjct 90 GTGCATCGCGGAGAACAAAGCACCACCGAATACACCAGCAACTCCCAACATATGGAAGGG 31 Query 26323 GTGCATGAGTATATTATGTTCTGCTTGGAA 26352 |||||| || || || |||||||||||||| Sbjct 30 GTGCATCAGGATGTTGTGTTCTGCTTGGAA 1 >seq3509123 Length=199 Score = 82.4 bits (90), Expect = 2e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 25865 GACTCAGATGATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCA 25924 ||||||| || ||||| || | || ||||| ||||| || ||||||||||| ||||| Sbjct 152 GACTCAGCAGAAGCTAAATCTAAGGGGAAGTTGTGAGCGTTGCGCTCGTGCATTACTTCC 93 Query 25925 AAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCATGT 25962 | || |||||||| ||||| | ||||||||||| || Sbjct 92 ATACCCAGGTTAGCGCGGTTGATGACATCAGCCCAGGT 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140751315909440