Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq982775 176 1e-39 >seq982775 Length=28252 Score = 176 bits (194), Expect = 1e-39 Identities = 440/664 (66%), Gaps = 6/664 (1%) Strand=Plus/Minus Query 780 GACCTGAGCCGCAAACGGCGGTTGAATGGGCAGACGATAATTACTATCTCCCCAAAGAGT 839 |||| || ||| || | || || ||||| ||||| |||| ||||| | | || | Sbjct 2200 GACCGGAACCGAAATCAGCTAGCGAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAAT 2141 Query 840 CGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGA 899 | | || || ||||| || ||| ||||| ||| || ||| |||||| | || || | Sbjct 2140 CTTCATATCACGAAGGTCGTTGGAAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAA 2081 Query 900 TGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAA 959 |||| ||| || || | || ||||| || ||||| || || |||| || | | Sbjct 2080 TGGGCTCGGATGCAATCCGAGTTGTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCA 2021 Query 960 AAATGTTGCTGGGTGTTTATGCGTATTTTATTCAGCACAAGCAGCGAAATTCCCTTATCT 1019 | ||| | || | || | |||||| | | ||||||||| || || || || Sbjct 2020 AGATGCTCCTCGCTGCTATTGCGTACTACGTAGAGCACAAGCGTCGGAACGTACTG-TCG 1962 Query 1020 GGCT-GCCTACTGATGGTGACGCCGAAAACTTTATGAAGTCGCATGTTGAGCCGACGATT 1078 || ||| || ||| ||||| || || ||| || | || ||||| | | ||| Sbjct 1961 TTCTCGCCGACCGATACCGACGCTGAGAAGTTTTCAAAAACTCACGTTGATACAGCAATT 1902 Query 1079 CGCGATATTCCGTCACTTCTGGCGCTGGCCCCCTGGTATGGAAAAAAGCACCGGGACAAT 1138 || ||| ||||| | || || ||| ||||| |||| |||| |||||||| || || Sbjct 1901 CGTGATGTTCCGACGCTGAAGGAGCTTGCCCCTTGGTGCGGAATGAAGCACCGAGATAAC 1842 Query 1139 ACGCTCAGTATGAAACGCTTCTCCAACGGTCGCGGGTTCTGGTGTCTGGGTGGTAAAGCG 1198 ||| | | ||| || ||||| ||||| || | | || ||||| ||| Sbjct 1841 ACGTTAGATCAGAAGCGGTTCTCTAACGGCAAGCAATTATTCATACGCGGCGGTAAGGCG 1782 Query 1199 GCGAAAAACTATCGTGAGAAATCGGTCGATGTCGCCGGTTACGATGAACTGGCGGCATTC 1258 || | ||||| ||||| | || | ||||||| || ||| || || || || |||||| Sbjct 1781 GCTAGGAACTACCGTGAAACGTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGCATTC 1722 Query 1259 GATGAAGATATTGAGAAAGAGGGATCCCCGACGTTCCTGGGTGATAAACGTATTGAGGGG 1318 ||| | |||||||| ||||| ||||| ||||| || |||||||| ||| |||| || Sbjct 1721 GATAAGGATATTGAAAAAGAAGGATCGCCGACCACTCTCGGTGATAAGCGTCTTGAAGGT 1662 Query 1319 TCT--GTCTGGCCCAAATCTATTCGCGGCTCAACGCCAAAAACAAAGGGGACCTGCCAGA 1376 || || || || || || || || ||||| ||||||| || ||||||| Sbjct 1661 TCGACGTACGGT--AAGTCGATACGTGGTTCAACACCAAAAATTCGCGGCGAATGCCAGA 1604 Query 1377 TTGAGCGTGCTGCCAGCGAGTCCGGGCATTTCATGCGTTTTCATGTTGCCTGTCCGCACT 1436 |||| |||||| |||||||||| | | | | | | |||| || | || ||||||| Sbjct 1603 TTGAAAATGCTGCTAGCGAGTCCGAGTACTACTTTAGATTTCGGGTCCCGTGCCCGCACT 1544 Query 1437 GTGG 1440 | || Sbjct 1543 GCGG 1540 Score = 86.0 bits (94), Expect = 2e-12 Identities = 221/330 (67%), Gaps = 19/330 (6%) Strand=Plus/Minus Query 1662 CGCCAGACAGCGTGACGTTTCACATCTGGACGGCATACAGCCCGTTTACCACCTGGGTTC 1721 ||||| ||| | || ||||| | ||||| || || |||||||| || || |||| | Sbjct 1279 CGCCATCAAGCATTACCTTTCAAGTATGGACAGCTTATAGCCCGTTCACTACGTGGGCGC 1220 Query 1722 AGATCGTTAAAGACTGGCTAAAAACGAAAGGGGATACAGGAAAGCGTAAAACCTTCGTGA 1781 ||||||| | || | || |||| || ||| | | ||| || ||||| |||| Sbjct 1219 GGATCGTTGAGGATTTTCTCCGCGCGAAGGGTGATGCCAGCAAGTTAAAGACCTTTGTGA 1160 Query 1782 ACACCACTCTGGGCGAAACATGGGAGCCTAAAATTGGTGAACGGCCTGACGCGGAGC--- 1838 | ||||| || || ||||| |||||| | ||| ||||| ||| ||| ||||| Sbjct 1159 ATACCACCCTTGGTGAAACTTGGGAGGATGAAACGGGTGAGGGGCTTGAGTGGGAGCAGC 1100 Query 1839 TC-ATGGCCGAACGCAAAGAGTTCTTCGGGGCATCCGTACCGGA---GCGTGTTGCTT-A 1893 || || ||| ||| ||| ||||| || | |||||||| | ||| |||| | Sbjct 1099 TCTATAACCGG-CGCGAAG---TCTTCC---CACCGGTACCGGATGAGGTTGTGGCTTTA 1047 Query 1894 TCTGACAGCCGGGATCGACTCCCAACTGGATCGATATGAAATGCGCGTCTGGGGATGGGG 1953 | || | || || || | ||| ||||| |||||| | || ||||| | || Sbjct 1046 TTTGGCGGC----ATAGATACACAAGATGATCGCTATGAAGGCAGGGTTTGGGGGTACGG 991 Query 1954 GCCCGGTGAGGAAAGCTGGCTGATTGACCG 1983 | ||||| ||||||||||||||||| || Sbjct 990 GGTTGGTGAAGAAAGCTGGCTGATTGATCG 961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140604954055808