Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq760737 152 7e-32 >seq760737 Length=2966 Score = 152 bits (168), Expect = 7e-32 Identities = 392/583 (67%), Gaps = 19/583 (3%) Strand=Plus/Minus Query 18173 TGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCT 18232 ||||| ||||| ||||| || ||||||||||| ||| || | || || | | ||| Sbjct 1231 TGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTGAAAAAGTGAGTCCTGGAAGCAACCCT 1172 Query 18233 CttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCAC 18292 || ||||| ||||||||||||| ||||| | | |||| || || || || || || Sbjct 1171 CTCTTTTTCAGCCAAAATATCGCAGCGAATGATCCACAAAAAAAAATGCCTTCTACACAT 1112 Query 18293 GCGAACGCTATTAATCTTTCAGCAAAACTGTATTTAT-TGCT-CAGTATCCATTTTTGTG 18350 || || || ||||| || || ||||| || | |||| | | || ||||| | | Sbjct 1111 GCAAAAGCGATTAACCTCTCTGCAAA--TG-AGTTATCAGATGCA--ATCCAAGCTAAAG 1057 Query 18351 CCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACA-AATCATCT 18409 |||| || | | | || |||| | || || || ||||| | | ||| | Sbjct 1056 CCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTTTCGATCGCGTTAAAAAGACACATTT 997 Query 18410 TTT--TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTA 18467 ||| |||| | ||||| |||||||| || |||||||| ||||||||| | ||| | Sbjct 996 TTTCATCTTCG---TCTTTGATATAAGTTTCAATTAACAAGCTATACATTTCCGTATGAA 940 Query 18468 TGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTC-G 18526 | ||||||| || |||||||| | |||||| || | || | | ||||| || | Sbjct 939 TATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTTTATTTCTGCAATTTGAACTTCGG 880 Query 18527 CTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCC 18586 ||| |||||| | || | ||| || || || | |||||| ||| || || || Sbjct 879 CTA-AAAATCGCTGGACTATATTTTCTAATACAATGCAATCAGCATTTGCAAAGAAAGCT 821 Query 18587 AAAACATATTTAATGAAATGT-TTTTCAT-TATCCTTGAGATTGTTCCATTCATCTATAT 18644 || | || || ||| ||||| ||||||| | | || | | || ||| || | || || Sbjct 820 AATATGTACTTGATG-AATGTCTTTTCATCTGTAGTT-AATTGGTACCAGTCTTGTAAAT 763 Query 18645 CTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 | |||| || ||||||||| | ||||||||| || | | || | ||| |||||| Sbjct 762 CCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGAAGCCTGTGCTTTTTTATACATTG 703 Query 18705 TATAAATATCTTCATGTTGTATAGGAAATAATATATATCGTTT 18747 | ||| | |||| |||||| ||||||| | | | ||||| Sbjct 702 TCCAAAATTTATCATATTGTATTGGAAATAGAACAAAGCGTTT 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 695568568951200