Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq760737 199 7e-46 >seq760737 Length=2966 Score = 199 bits (220), Expect = 7e-46 Identities = 398/590 (67%), Gaps = 13/590 (2%) Strand=Plus/Minus Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 |||||| |||||| || ||||| ||||| || ||||| || |||||| | |||||| Sbjct 1241 AAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTGAAAAAGTGAGTCCTGG 1182 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 49948 | || ||||||||||| ||||||||||| | || || | | |||| || || || Sbjct 1181 AAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGATCCACAAAAAAAAATGCC 1122 Query 49949 CTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCA 50008 || ||||| ||||| || |||| || || |||| | | |||||| | ||||| Sbjct 1121 TTCTACACATGCAAAAGCGATTAACCTCTCTGCAAA---TGAGTTATCAGATGCAATCCA 1065 Query 50009 ATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 | || ||||||||| || || ||||| | |||||| |||| || || ||||| || Sbjct 1064 AGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTTTCGATCGCGTTAAA-AA 1006 Query 50069 TTCA-tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAG 50127 || ||||||||| ||||| || ||||||||| | Sbjct 1005 GACACATTTTTTCATCTTCGTCTTTGATATAAGTTTCAATTAACAAGCTATACATTTCCG 946 Query 50128 AATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAA 50187 ||| | | |||||| || || ||||| |||||| | || ||||| | |||| Sbjct 945 TATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTTTATTTCTGCAATTTGAA 886 Query 50188 CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGA 50247 |||||| || ||||| | |||| ||| || ||||||| | ||||| ||| |||| Sbjct 885 CTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCAATCAGCATTTGCAAAGA 826 Query 50248 ATGCTAAAACGTATTTAATAAAATGT-TTTTCATTATCTTTTAAATTTTCCCAAGATTCA 50306 | ||||| | ||| || || ||||| ||||||| |||| | | ||| || Sbjct 825 AAGCTAATATGTACTTGAT-GAATGTCTTTTCATCTGTAGTTAATTGGTACCAGTCTTGT 767 Query 50307 AGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATAC 50366 | ||| |||| |||||| ||||| | | |||||||||||| || | |||||||||| Sbjct 766 AAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGAAGCCTGTGCTTTTTTATAC 707 Query 50367 ATT---TGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTT 50413 ||| | || ||||| | ||| || |||||||| ||| | ||||| Sbjct 706 ATTGTCCAAAATTTATCATATTGT---ATTGGAAATAGAACAAAGCGTTT 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 935649362976720