Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq760737 167 4e-36 >seq760737 Length=2966 Score = 167 bits (184), Expect = 4e-36 Identities = 579/897 (65%), Gaps = 25/897 (3%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 |||||||||| || |||| ||||||| |||||||| | ||| ||||| | ||| || Sbjct 1542 ATTTTTGGTACTCGCCAACTCTTTTTTCAAAAAAGTTAGATTTCCCTTCAATTGAAATAT 1483 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATAT 38948 || |||||| ||||| || ||||| | | |||| ||| | | | | ||| | || Sbjct 1482 TATCCATAAAGTCAAACGGGTTTTTAGCGCGA-AATAACTTTTTACAACCCAATTC-TAC 1425 Query 38949 AATAAT-CTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAA 39007 || || | || ||||||||||| | ||| ||| ||| | || |||||| || || Sbjct 1424 AAGAAGACGGTCTGCCACAAATTCTATATACTGTTTCATAAGATCTTTATTCATTCC-AA 1366 Query 39008 TAATTTAAAT-GGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaa 39066 | |||| | | || |||| |||| ||| |||||||| || || || || | || Sbjct 1365 TCATTTTATTCGGGCATGCCGTTTCAAAAAAATCTTTTTCGATATCGACTGCGTCACCAA 1306 Query 39067 ttatcataattatattattttttgataa--tttatatttaatatgattcgc-atataGTA 39123 || | || || || || || ||| | ||| | | | || | | | | | Sbjct 1305 CAATTTTG--TAAATGATGGATTCATTCGGTTTTTGTTTTA-AGCACTCTCTAAACACAA 1249 Query 39124 AACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 39183 || | |||||| |||||| |||||||| ||||| || ||||| || |||||| | Sbjct 1248 GGCAAGAAAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTGAAAAAGTGA 1189 Query 39184 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 39243 |||||| | || ||||||||||| ||||||||||| | || || | | |||| | Sbjct 1188 GTCCTGGAAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGATCCACAAAAAA 1129 Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA 39303 | || || || ||||| ||||| || |||| || || |||| | | |||||| | Sbjct 1128 AAATGCCTTCTACACATGCAAAAGCGATTAACCTCTCTGCAAA---TGAGTTATCAGATG 1072 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363 ||||||| || |||||||| || || ||||| | |||||| |||| || || | Sbjct 1071 CAATCCAAGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTTTCGATCGCGT 1012 Query 39364 TAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG-AATAC 39422 |||| || || || |||| Sbjct 1011 TAAA-AAGACACATTTTTTCATCTTCGTCTTTGATATAAGTTTCAATTAACAAGCTATAC 953 Query 39423 ATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAA 39482 ||||| | ||| | | |||||| || || ||||| |||||| || ||||| | Sbjct 952 ATTTCCGTATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTTTATTTCTGCA 893 Query 39483 TACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCT 39542 |||||||||| || ||||| | |||| ||| || ||||||| | ||||| | Sbjct 892 ATTTGAACTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCAATCAGCATTT 833 Query 39543 GCGAAGAATGCTAAAACATATTTAATAAAATGT-TTTTCATTATCTTTTAAATTTTCCCA 39601 || ||||| ||||| | || || || ||||| ||||||| |||| | | ||| Sbjct 832 GCAAAGAAAGCTAATATGTACTTGAT-GAATGTCTTTTCATCTGTAGTTAATTGGTACCA 774 Query 39602 AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTT 39661 || | ||| |||| |||||| ||||| | | ||||||||| || || | ||| Sbjct 773 GTCTTGTAAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGAAGCCTGTGCTTT 714 Query 39662 TTTATACATT---TGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTT 39715 |||||||||| | || ||||| | ||| || ||||||| ||| | ||||| Sbjct 713 TTTATACATTGTCCAAAATTTATCATATTGT---ATTGGAAATAGAACAAAGCGTTT 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 860238063795600