Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq456579 93.3 6e-13 seq805419 89.7 8e-12 >seq456579 Length=1737 Score = 93.3 bits (102), Expect = 6e-13 Identities = 217/324 (67%), Gaps = 9/324 (3%) Strand=Plus/Minus Query 794344 TCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTG 794403 |||||||| ||||| | ||||||| ||| || |||||||| || || | ||||| Sbjct 1059 TCGTCGCGGCTGATGAGTTCGTTGGAGAAGGTCAGACCGGGCATCAGACCCCTTTTCTTC 1000 Query 794404 AGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCG 794463 | ||| || || || ||| || || || || || || |||||| ||| || || Sbjct 999 AACCAGAATATCGCGGCGAACGATCCGGAAAAGAAAATTCCTTCGACGATGGCGAAAGCG 940 Query 794464 ACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCT 794523 ||||| | | ||| |||| | | | | || ||| ||||| ||| ||||| || Sbjct 939 ACGAGTCTCGTGGCGAAAGAGGCTCGACTATCATTG---ATCCATCTCAGGGCCCAGTCG 883 Query 794524 GCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC---GCGAAAGAGGTGGTCCTTCTCG 794580 || || || |||||| ||| | || || || || | | || | | || ||| || Sbjct 882 GCTTTCTTTTTCACCGCGGGAATAGTTTCAATCGCTTTGAGCAA-ATATCGTTTTTCGCG 824 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | |||| || |||||| || ||||| || ||| | || |||||||||||||| Sbjct 823 T--GAATCCTGGATGTAGGTATCTATGAGAAGGCCGTACATTTCCGAGTGGATGTTTTCC 766 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 || |||||| || || |||||| Sbjct 765 ATCATGATCTGAAACCCGTAAAAG 742 >seq805419 Length=1311 Score = 89.7 bits (98), Expect = 8e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 |||||| |||| | || || |||| ||| ||||| ||||||||||| || || || Sbjct 1122 TCGTTGGAAAAGGACAGACCCGGCACGAGACCGCGTTTCTTGAGCCAGAATATCGCCGCA 1181 Query 794422 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAG 794468 || || ||||| ||||||||||||||||| ||||||||| | || || Sbjct 1182 AAGCTTCCCGAAAAAAAGATGCCCTCGACAGCGGCAAAGGCCACCAG 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7494122144325798