Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3578837 104 2e-16 seq358313 104 2e-16 seq1725518 102 6e-16 seq215353 100 2e-15 seq1902441 95.1 9e-14 seq823764 86.0 4e-11 >seq3578837 Length=214 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 ||||| ||||| ||||| ||| || || |||||| |||||| ||| ||||| | | Sbjct 142 GCTGCCTCTCCGATCAGTCTTTCAGTGTCGTTAAATGCAACATAACTTGGTGTTGTTCTA 83 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850 || |||||||| || ||||||||||||||||| ||||| || | || || ||||| | Sbjct 82 TTTCCTTGATCGTTAGCAATAATTTCAACTTTGCCATTCTGGAACACTCCCACACAGGAA 23 Query 282851 AAAGTTGTTCCTAAATCAAT 282870 | |||||||| ||||| || Sbjct 22 TAGGTTGTTCCCAAATCGAT 3 >seq358313 Length=1722 Score = 104 bits (114), Expect = 2e-16 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 |||||||| |||||||||| ||| | ||||||||||| | || |||||||| || ||| Sbjct 1234 GGTTCATTGATAATTCTCATGACAGTCAGACCAGCAATGGTCCCGGCATCTTTGGTCGCT 1175 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 |||||| | |||||| ||||| ||||||||||| | ||||| | ||| || | ||| Sbjct 1174 CTTCTTTGGGCATCGTTGAAATAGGCAGGAACAGTGACGACGGCGTGTGTGACCTTTTTA 1115 Query 282488 CC 282489 || Sbjct 1114 CC 1113 >seq1725518 Length=106 Score = 102 bits (112), Expect = 6e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282347 TACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATT 282406 || |||| ||| || || ||||| |||||||| ||||||| ||||| || |||||||| Sbjct 3 TATGCAAGAGCTGCTGCTGTTGGCTCATTAATGATTCTCATTACATTGAGTCCAGCAATG 62 Query 282407 CTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 ||| ||||| ||||||||||||| |||||||||||| || || Sbjct 63 ACTCCAGCATCCTTAGTGGCTTGTCGTTGTGAATCGTTGAAGTA 106 >seq215353 Length=926 Score = 100 bits (110), Expect = 2e-15 Identities = 121/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 282715 TGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT-TCTGTCTCTGTAAATGAAACAT 282773 |||| |||| | ||||| ||||| ||||||| || | ||||| || | |||| |||| Sbjct 280 TGCAACTTGGTTCTTGGCAGCATCGCCAATCA-ATCTCTCTGTGTCGTTGAATGCCACAT 338 Query 282774 ATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCC 282833 | ||| || || || || ||||||||||| || |||||||||||||| ||||| || Sbjct 339 AGCTTGGTGTGGTTCGGTTTCCTTGATCATTGGCGATAATTTCAACTTTTCCATTCTGGA 398 Query 282834 ATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875 | || || ||||| ||||||| || ||||| || |||| Sbjct 399 ACACTCCCACACAGGAGTAAGTTGTCCCCAAATCGATTCCAA 440 >seq1902441 Length=109 Score = 95.1 bits (104), Expect = 9e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| ||| || || ||||| || ||||| |||| || ||||| || |||||| Sbjct 107 CCGTATGCAAGAGCTGCTGCTGTTGGCTCGTTAATGATTCACATTACATTGAGTCCAGCA 48 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 ||| ||| ||||| |||||||||||| |||||||||||| || || Sbjct 47 ATTACTCCAGCATCCCTAGTGGCTTGTCGTTGTGAATCGTTGAAGTA 1 >seq823764 Length=5732 Score = 86.0 bits (94), Expect = 4e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||||| ||||| | |||||||||||||| | |||||| || || ||||||||||| || Sbjct 4019 GCAGTAACATTCAAGATACCATTGGCATCAATATCAAAAGTTACCTCAATTTGAGGAACA 4078 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | |||| || || ||||| || | || ||||||| | | || ||||| || Sbjct 4079 CCACGGGGAGCCGGAGGAATCCCATCGAGGCGGAAAGTTCCCAAACTCTTGTTATCATTG 4138 Query 281546 GTGAATTTTCGTTCACCCTCGAAAA 281570 | | || |||||||||| || || Sbjct 4139 GACATTTCCCGTTCACCCTGGAGAA 4163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3545804523759732