Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq396905 109 1e-18 seq962546 95.1 2e-14 seq3915204 89.7 1e-12 seq916886 89.7 1e-12 seq650275 86.0 1e-11 seq559689 84.2 4e-11 >seq396905 Length=1799 Score = 109 bits (120), Expect = 1e-18 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 ||||| || | |||||||||||| || ||||||| ||| ||| || ||| || || Sbjct 647 TGCAGTGTGGCTTCTTTCTGTATGTTGTAATCAGCTAGGATTTGGCCATCTCGAAGCTGC 588 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||||| || | ||| || |||||| | || |||||||| || || ||||| Sbjct 587 TTACCAGCAAAGAGAAGACGTTGCTGTTCTGGATGAATACCTTCCTTGTCCTGTATCTTA 528 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 ||||| ||| ||||||| | ||| ||||| || || | || || || || |||| Sbjct 527 GCTTTAACACTTTCAATAGCCTCAAGTGGTTCAACCTCAAGAGGAATTGTTTTTCCTG 470 >seq962546 Length=552 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 198371 AGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGAC 198430 |||||| || |||||| | ||| | | |||||||||||||| ||||| | |||||||| Sbjct 375 AGAAGGCAAGATGCATGGCTTTCTGCGGATGTACTGGGCTAAGAAGATCTTGGAATGGAC 316 Query 198431 AAGAACACCGGAAGACGCTTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACTAG 198489 | | |||| || || || ||| | |||| |||||||| || | |||||| | | | Sbjct 315 CACATCACCAGAGGAAGCCTTG-GAAATAGCCATCTATCTCAATGACAAGTACAACTTGG 257 Query 198490 ACGGCACGGATCCTAACGGATACGTAGGT 198518 | |||| |||||| |||||||| || ||| Sbjct 256 ATGGCAGGGATCCCAACGGATATGTTGGT 228 >seq3915204 Length=498 Score = 89.7 bits (98), Expect = 1e-12 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 144088 ATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGCCCCG 144147 |||| | || | |||||| ||||| |||||| | | || ||| | || || || | Sbjct 232 ATTTTCAGACGTGTATAGTGAGAGCATGGGATCGTGAGAGGCCGCTTTTATTCTGTCCTG 173 Query 144148 CTATGAATACCCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATAC-TTTAAAA 144206 |||||||||| | ||||||||||||||| || |||| ||||||||||| || | |||| Sbjct 172 CTATGAATACTCATATGTGGGAACATCCGATAACAGCCAAACATATAGACACACTCAAAA 113 Query 144207 CATATGGGTTTCATAGAAATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAGA 144259 ||| |||| | |||| | | || || || |||| | || |||||||| Sbjct 112 GCTAT-GGTTATAGAGAAGTGAAGTGCATTGAGAAAACTTTGGCATGTGGAGA 61 >seq916886 Length=1008 Score = 89.7 bits (98), Expect = 1e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| ||||| ||||| |||||||| |||||||| || ||| | |||||||||||| Sbjct 1006 CCTTCCTTGTCTTGGATCTTGGCTTTTACGTTTTCAATGGTGTCACTTGGTTCTACTTCC 947 Query 82767 AAAGTTATCGTCTTGCCTG 82785 | ||| || ||||| |||| Sbjct 946 AGAGTGATAGTCTTTCCTG 928 >seq650275 Length=2042 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 82622 TTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGAT 82681 ||||| || ||||| || || ||| | | || ||||| |||||||||||||||||||| Sbjct 1029 TTTCTCGATGTTATACTCTGAGAGAGTGCGGCCATCTTCAAGTTGTTTTCCAGCAAAGAT 1088 Query 82682 TAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTC 82741 || | || || ||||| | || || ||| |||||||||| ||||| ||||| || Sbjct 1089 AAGACGCTGGTGCTCTGGTAGAATGCCCTCCCAGTCTTGAATCTGGGCTTTCACATTCTC 1148 Query 82742 AATCGTATCATTAGGTT 82758 || || || | |||| Sbjct 1149 GATGGTGTCGCTTGGTT 1165 >seq559689 Length=1448 Score = 84.2 bits (92), Expect = 4e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || |||||||| ||||| |||||| || || || | | ||||| Sbjct 94 TGTAGTGTTGACTCTTTCTGAATATTGTAATCACCAAGGGTTTGGCCATATCTAAGTTGC 153 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 | ||||||||||| || | ||| || |||||||| | |||||||| || || ||||| Sbjct 154 TGACCAGCAAAGATAAGACGTTGCTGTTCTGGAGGAACACCTTCCTTGTCCTGTATCTTA 213 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||||| || | || ||| || ||| ||||| || || | ||| Sbjct 214 GCTTTGACGTCTTGAATGGTGTCAGATGGTTCAACCTCAAGAGT 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 933128151207840