Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3915204 87.8 3e-12 seq962546 86.0 1e-11 >seq3915204 Length=498 Score = 87.8 bits (96), Expect = 3e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 143107 ATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGTCCCG 143166 |||| | || | |||||| ||||| |||||| | | || ||| | || ||||| | Sbjct 232 ATTTTCAGACGTGTATAGTGAGAGCATGGGATCGTGAGAGGCCGCTTTTATTCTGTCCTG 173 Query 143167 CTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATGC-TTTAAAA 143225 ||||||||| | ||||||||||||||| || |||| ||||||||||| | | |||| Sbjct 172 CTATGAATACTCATATGTGGGAACATCCGATAACAGCCAAACATATAGACACACTCAAAA 113 Query 143226 CATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCCTGCGGAGACATAGGA 143285 ||| |||| | |||| | | ||||| || |||| | || || ||||| | ||| Sbjct 112 GCTAT-GGTTATAGAGAAGTGAAGTGCATTGAGAAAACTTTGGCATGTGGAGATAAAGGT 54 Query 143286 AA 143287 || Sbjct 53 AA 52 >seq962546 Length=552 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 183054 AGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGAC 183113 |||||| || |||||| | ||| | || |||||||||||||| ||||| | |||||||| Sbjct 375 AGAAGGCAAGATGCATGGCTTTCTGCGGATGTACTGGGCTAAGAAGATCTTGGAATGGAC 316 Query 183114 AAGAACTCCGGAAGATGCTTTGAGTTATAG-TATCTATATGAACAATAAGTACGAACTAG 183172 | | | || || || || ||| | |||| |||||| | || | |||||| | | | Sbjct 315 CACATCACCAGAGGAAGCCTTG-GAAATAGCCATCTATCTCAATGACAAGTACAACTTGG 257 Query 183173 ACGGTACGGATCCTAACGGATACGTAGGT 183201 | || | |||||| |||||||| || ||| Sbjct 256 ATGGCAGGGATCCCAACGGATATGTTGGT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 858598819955520