Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq577692 295 2e-75 seq3816217 242 1e-59 seq3751544 163 8e-36 seq3509123 84.2 6e-12 >seq577692 Length=2825 Score = 295 bits (326), Expect = 2e-75 Identities = 481/691 (70%), Gaps = 4/691 (1%) Strand=Plus/Plus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 |||||||| ||| ||||||| |||||| | || |||||||| | ||||||| || Sbjct 183 TGGGTAACATCTACCAATAACCGCCTTTATGTAGGTTGGTTTGGTATTGTGATGATCCCT 242 Query 18793 TGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGAC 18852 | || | || || || ||||| | | || || | |||||||||||||| || Sbjct 243 ACCTTGCTAACTGCCACCATCTGTTTTGTGTTAGCTTTTGTAGCTGCACCTCCTGTGGAT 302 Query 18853 ATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCG 18912 ||||| ||||||||||| || ||| | || ||| | || || || |||||||| | Sbjct 303 ATTGACGGCATCCGCGAACCCGTTTCCGGTTCTCTGTTGTACGGCAATAACATCATCACC 362 Query 18913 GGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 18972 | || || || || || ||||| || || | ||||| || || || |||||||| Sbjct 363 GCCGCTGTTGTACCCAGTTCTAATGCGATTGGGTTGCACTTTTATCCCATCTGGGAAGCG 422 Query 18973 --AATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 19030 || | ||||||||||||| || ||||| || || | ||| | | || ||||||| Sbjct 423 GCAAATA--TTGATGAATGGCTTTATAACGGCGGCCCCTACCAGTTGATTGTTTTCCACT 480 Query 19031 TCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGA 19090 |||| || ||| | | | || ||||| || ||||||||||| ||||| |||| | Sbjct 481 TCCTAATCGGCATTTTTTGCTATATGGGTCGTGAGTGGGAACTGTCTTATCGGTTAGGAA 540 Query 19091 TGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCC 19150 |||| ||||||||| |||||| || |||||||| || || || | ||||| | Sbjct 541 TGCGTCCTTGGATTGCTGTTGCTTATAGCGCTCCTGTAGCTGCTGCGACGGCGGTACTGT 600 Query 19151 TTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTA 19210 | || ||| | | ||||||||||| ||| || | | | || |||| ||| ||| | Sbjct 601 TAGTTTATTCTATCGGTCAAGGTTCTTTTTCTGATGGTTTACCGCTGGGGATTTCTGGCA 660 Query 19211 CGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACA 19270 | || |||| ||| | || | || || || ||||| | | |||||||| ||||| | Sbjct 661 CATTTAACTTTATGTTAGTGCTGCAAGCAGAGCATAATGTTTTAATGCACCCCTTCCATA 720 Query 19271 TGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTG 19330 |||| || || |||||||| || || || | || || || ||||||||||| || | Sbjct 721 TGCTGGGAGTAGCTGGTGTCTTTGGTGGCGCTCTTTTCTCAGCTATGCACGGTTCTCTGG 780 Query 19331 TTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGT 19390 | || || || | || |||||||| |||||| | | || ||| || || | Sbjct 781 TGACATCTTCTTTAGTACGTGAAACCACTGAAATTGAAAGCCAAAACCGGGGTTATCGCT 840 Query 19391 TTGGGCAAGAAGAAGAGACTTATAACATTGT 19421 |||| ||||||||||| |||||||||||||| Sbjct 841 TTGGACAAGAAGAAGAAACTTATAACATTGT 871 >seq3816217 Length=329 Score = 242 bits (268), Expect = 1e-59 Identities = 251/329 (76%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 19231 TTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTG 19290 ||||| || ||||| |||||||| |||||||| ||||| ||| | || || |||||||| Sbjct 1 TTCCAAGCAGAACACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTTGCTGGTGTA 60 Query 19291 TTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGT 19350 ||||| || | | || |||||||||||||| | || || || || | |||||| Sbjct 61 TTCGGTGGTGCTTTGTTCTCCGCGATGCACGGTTCTTTGGTAACTTCTTCCTTGGTGCGT 120 Query 19351 GAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACT 19410 ||||| || ||| | |||||| ||||| || ||||| || || ||||||||||| || Sbjct 121 GAAACCACCGAAATCGAATCTCAAAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACC 180 Query 19411 TATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTC 19470 || |||||||| || ||||| || || || ||||| || || ||||| || || || ||| Sbjct 181 TACAACATTGTGGCAGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATATGCTTCTTTC 240 Query 19471 AACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTT 19530 ||||| |||||||| || || ||||| |||| ||||||||| || | ||||| ||||| Sbjct 241 AACAACAGCCGTTCCCTGCACTTCTTCTTGGGTGCTTGGCCGGTAATCGGCATCTGGTTC 300 Query 19531 GCCGCCCTTGGGGTAAGCACCATGGCATT 19559 |||| | || ||| ||||||||| || Sbjct 301 ACCGCTTTAGGTGTATCCACCATGGCCTT 329 >seq3751544 Length=281 Score = 163 bits (180), Expect = 8e-36 Identities = 205/278 (74%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 18732 CTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCC 18791 ||||||||| || | ||||| |||||| | |||||||| || |||||||| || Sbjct 6 CTGGGTAACATCCACCAACAACCGCCTTTATGTAGGCTGGTTCGGTGTTCTGATGATCCC 65 Query 18792 GTGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGA 18851 || || | ||||| || || | ||| || || || || ||||| || || || || Sbjct 66 TACCCTACTAACTGCTACCATCTGCTACATCATCGCTTTTATCGCTGCTCCCCCCGTGGA 125 Query 18852 CATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATC 18911 |||||| || |||||||| || || || || ||| | || || ||||||||||| || Sbjct 126 CATTGACGGTATCCGCGAACCCGTAGCTGGTTCTCTGTTGTACGGCAACAACATCATCTC 185 Query 18912 GGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC 18971 || || || ||||| | |||||| ||||| || ||||||||||| ||||||||||| Sbjct 186 TGGTGCGGTTGTTCCTTCCTCCAATGCGATCGGTCTGCACTTCTACCCCATTTGGGAAGC 245 Query 18972 TAATTCA-CTT-GATGAATGGCTCTACAACGGGGGACC 19007 | || ||| |||||||||||||||||||| || || Sbjct 246 --AGCCAGCTTGGATGAATGGCTCTACAACGGTGGCCC 281 >seq3509123 Length=199 Score = 84.2 bits (92), Expect = 6e-12 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 19567 AATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGG 19626 || || || ||||| ||||| ||| | | ||| || ||||| || || | || ||| Sbjct 1 AACGGTTTCAACTTCAACCAATCCGTAATGGACTCCAGCGGTCGGGTAGTTAACACCTGG 60 Query 19627 GCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCAT 19686 ||||| | |||| || |||||||| || | || ||||||||||| || || ||||| Sbjct 61 GCTGATGTCATCAACCGCGCTAACCTGGGTATGGAAGTAATGCACGAGCGCAACGCTCAC 120 Query 19687 AACTTCCCACTTGATTTGGCT 19707 |||||||| | ||||| ||| Sbjct 121 AACTTCCCCTTAGATTTAGCT 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134497395871956