Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq760737 306 3e-78 seq456579 224 7e-54 seq3830724 109 4e-19 seq3772600 102 6e-17 >seq760737 Length=2966 Score = 306 bits (338), Expect = 3e-78 Identities = 605/882 (69%), Gaps = 20/882 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | |||||||| |||||| || | | ||| |||||| |||||||||||||| Sbjct 666 TTTGTTCTATTTCCAATACAATATGATAAATTTTGGACAATGTATAAAAAAGCACAGGCT 725 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 ||||||||||||| | ||||||||||| || || || ||| | | ||| |||| Sbjct 726 TCATTTTGGACAGTTAATGAAGTTGATTTAACAAAGGATTTACAAGACTGGTACCAATTA 785 Query 43820 AAACCACAAGAAAA-ACATTTTATATCTTTGGTTTTGGCGTTTTTTGC---TGCGAGCGA 43875 | || | ||||| ||||| || | | || || || ||||| ||| || Sbjct 786 ACTACAGATGAAAAGACATTC-ATCAAGTACATATTAGCTTTCTTTGCAAATGCT---GA 841 Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC 43935 | || || |||||| | || || ||| ||||||||| | ||||| Sbjct 842 TTGCATTGTATTAGAAAATATAGTCCAGCGATTTTTAGCCGAAGTTCAAATTGCAGAAAT 901 Query 43936 ACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995 | ||| |||||||| ||||| ||||| || |||||||||||| |||||||||| || | Sbjct 902 AAAATGCTTTTATGGCTTTCAGATTGCGATGGAAAATATTCATACGGAAATGTATAGCTT 961 Query 43996 TCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA 44055 | || || || || |||||||| | | || || | | ||||| ||||| || Sbjct 962 GTTAATTGAAACTTATATCAAAGACGAAGATGAAAAAATGTGTCTTTTTAACGCGATCGA 1021 Query 44056 AACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATG 44114 ||| ||||| ||| ||||| | || || || ||||| | ||||| || || Sbjct 1022 AACGTTACCTTGCG-TTAAAAAGAAGGCTGATTGGGCTTTAGCTTGGATTGCATCTGATA 1080 Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 | || |||| ||| | | |||| |||||| ||| ||||||||||| |||| |||| Sbjct 1081 ACTCATTTGCAGAGAGGTTAATCGCTTTTGCATGTGTAGAAGGCATTTTTTTTTGTGGAT 1140 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | || || || ||||||||| | || || |||| ||| | || || | || ||||||| Sbjct 1141 CATTCGCTGCGATATTTTGGCTGAAAAAGAGAGGGTTGCTTCCAGGACTCACTTTTTCAA 1200 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGAT 44294 | || ||||| | | || ||||||||||||||||||||| ||||| | | || || Sbjct 1201 ACGAATTAATTTCTAGAGACGAAGGCTTACATTGCGATTTTTCTTGCCTTGTGTTTAGAG 1260 Query 44295 ATCTAGGAGACGATAAGCCTTCATG--TAAGACAATTACAGATATTGTTGTAGAGGCAGT 44352 | | | | || || ||| | || ||||| | ||||||| || ||||| Sbjct 1261 AGTGCTTAAAACAAAAACC-GAATGAATCCATCATTTACA-AAATTGTTGGTGACGCAGT 1318 Query 44353 AAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGA 44412 | || ||| |||| ||| | ||| |||| || || | || ||||||||| | Sbjct 1319 CGATATCGAAAAAGATTTTTTTGAAACGGCATGCCCGAATAAAATGATTGGAATGAATAA 1378 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472 | | | ||||| || ||||| |||| | ||||| ||| | ||| | ||| ||||||| Sbjct 1379 AGATCTTATGAAACAGTATATAGAATTTGTGGCAGACCGTCTTCTTGTAGAATTGGGTTG 1438 Query 44473 CGATAAACA-CTATATTGTAC--AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGA 44529 |||| | ||| | | | ||||||||||||| |||||||| |||||||| | || Sbjct 1439 ---TAAAAAGTTATTTCGCGCTAAAAACCCGTTTGACTTTATGGATAATATTTCAATTGA 1495 Query 44530 AGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 ||| ||| | ||||||||||||||| | ||||| || || || Sbjct 1496 AGGGAAATCTAACTTTTTTGAAAAAAGAGTTGGCGAGTACCA 1537 >seq456579 Length=1737 Score = 224 bits (248), Expect = 7e-54 Identities = 420/610 (69%), Gaps = 13/610 (2%) Strand=Plus/Plus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 |||||| || || || ||| | || || || ||||| | || | ||| |||||||| Sbjct 485 GAAAATGTCTCAAGATTCGTCATTTTCCCGATACAATACGAAGATGTGTGGAAAATGTAC 544 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 || ||| |||| || |||||||| | | || |||||| | | ||||| | | Sbjct 545 AAGCGAGCGGAGGCTTCTTTTTGGACGACGGCTGAGGTTGATCTCGCCAAAGATAAACCC 604 Query 43805 CATTGG-ATTGCATTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTT 43862 |||||| | | | || || | ||||| | ||| || || | | || |||| Sbjct 605 CATTGGGAAAGTCTCAATGACGGCGAGAAATA--TTTCATCTCCCACATCCTCGCCTTTT 662 Query 43863 TTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTC 43922 | || | ||||||||||| || |||||| ||| | |||||| ||||| | Sbjct 663 TCGCGGGAAGCGACGGGATCGTTGTCGAAAATCTGGCGACACGGTTTTGTAGGGAAGTCC 722 Query 43923 AATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGG 43982 | | |||||||| || | ||||| |||||||| || || ||||| || || |||| Sbjct 723 AGATTCCAGAAGCGCGGTTCTTTTACGGGTTTCAGATCATGATGGAAAACATCCACTCGG 782 Query 43983 AAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA---T 44039 |||||||| | ||||| |||||||| |||||| | ||| |||| ||| | ||| | Sbjct 783 AAATGTACGGCCTTCTCATAGATACCTACATCCAGGAT--TCACGCGAA-AAACGATATT 839 Query 44040 TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099 || | || ||||| ||||| | || ||| | ||| | ||||| ||||||||||| | || Sbjct 840 TGCTCAAAGCGATTGAAACTATTCCCGCGGTGAAAAAGAAAGCCGACTGGGCCCTGAGAT 899 Query 44100 GGATAAATTCAAAT---GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156 |||| ||| | | | ||||| | |||| ||||| || || | || |||| Sbjct 900 GGATCAATGATAGTCGAGCCTCTTTCGCCACGAGACTCGTCGCTTTCGCCATCGTCGAAG 959 Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216 | ||||||||||| |||||||| || || ||||| ||||| |||||| | ||| |||||| Sbjct 960 GAATTTTCTTTTCCGGATCGTTCGCCGCGATATTCTGGTTGAAGAAAAGGGGTCTGATGC 1019 Query 44217 CTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTG 44276 | || |||| || || || || | || || || || || | ||||| || ||||| | Sbjct 1020 CCGGTCTGACCTTCTCCAACGAACTCATCAGCCGCGACGAGGCGTTACACTGTGATTTCG 1079 Query 44277 CTTGCTTGTT 44286 |||| || || Sbjct 1080 CTTGTTTATT 1089 >seq3830724 Length=343 Score = 109 bits (120), Expect = 4e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 ||||| ||||| | || ||||| || || || || |||||||| ||| | || |||||| Sbjct 342 GTTGTAGAAGGTGTATTTTTTTCGGGTTCTTTCGCCGCCATATTGTGGATGAAAAAACGA 283 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || |||||||| || ||||||||||| || || | || ||||| || ||||| || || Sbjct 282 GGATTGATGCCGGGATTGACGTTTTCCAACGAACTCATCAGTCGCGACGAAGGGTTGCAC 223 Query 44267 TGCGATTTTGCTTGCTTG 44284 || |||||||| || ||| Sbjct 222 TGTGATTTTGCCTGTTTG 205 >seq3772600 Length=295 Score = 102 bits (112), Expect = 6e-17 Identities = 115/151 (76%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 44057 ACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA 44115 |||||||| || | | ||| | |||||||||||||| | ||||||||| | | || || Sbjct 78 ACAGTACCGTGTG-TGAAAAAAAAAGCAGACTGGGCAATAAAATGGATAGGTGCTAAGGA 136 Query 44116 T---TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 | | ||||| || |||||||| |||||||||| || || ||||| ||||| || || Sbjct 137 TGCAACGTTTGGTGAGCGACTTGTGGCGTTTGCAGCAGTAGAGGGCATCTTCTTCTCGGG 196 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAA 44203 || ||||| ||||| |||||| | || ||| Sbjct 197 GTCCTTTGCAGCCATCTTTTGGCTGAAAAAA 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378233661833410