Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq201371 123 3e-23 seq343327 109 7e-19 seq942746 82.4 9e-11 >seq201371 Length=2102 Score = 123 bits (136), Expect = 3e-23 Identities = 172/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 11497 GCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGT 11556 ||| ||||| || ||||||| | |||||| || | | ||||| |||||||| || || Sbjct 1819 GCGGTTAGTAGCAGCAATAATAATAATGCCCGTGTTACCCTCAAAACCATCCATTTCAGT 1760 Query 11557 GAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTT--GCTGGCATACCACCAGCACTG 11614 | ||| || |||| || ||||||| |||||||| || | || |||||||| Sbjct 1759 TAATAACTGGTTAAGGGTCTGTTCTCGTTCATCATTACCGCCGCCAAT--ACCAGCACCA 1702 Query 11615 CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG 11674 || || || ||||||||||| |||||||| ||||| ||||| || | |||| Sbjct 1701 CGCTGGCGACCGACCGCATCAATTTCATCAATAAAGACGATACAGGGGGCAGTTTCCTTA 1642 Query 11675 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || | | ||| | |||||| ||||| || || || |||||||||||||||||||| Sbjct 1641 GCCTTCTTAAACAAATCGCGGACCCTGGAAGCCCCAACCCCAACAAACATCTCCACAAA 1583 >seq343327 Length=1519 Score = 109 bits (120), Expect = 7e-19 Identities = 197/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| || ||||| || | ||||| ||| | | ||| |||||||||||| Sbjct 1155 CGGTCAAACCGTCCCGGACGCAATAGGGCTGTATCCAACACATCAGGGCGATTAGTGGCT 1214 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 ||||| || | ||| || | | | ||||| |||||||| || || |||||||| ||| Sbjct 1215 GCAATCACAATAATTCCCGGATTACCCTCAAATCCATCCATTTCCGTCAGTAATTGGTTA 1274 Query 11570 ATTGTTTGTTCTCTCTCATCATT--TGCTGGCATACCACCAGCACTGCGTTGCTTGCCCA 11627 | || ||||| | |||||||| || | | | || || | ||||| || | Sbjct 1275 AGGGTCTGTTCCCGTTCATCATTACCGCCGCC--AATTCCCGCCCCCCGTTGGCGACCGA 1332 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687 | |||||||| |||||||| || | | ||| || ||| || || ||| ||| | Sbjct 1333 CAGCATCAATTTCATCAATAAAAATCAGACAGGGGGAATTATCCTTAGCCTTTTTAAAAA 1392 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 |||| || |||| ||||| || || ||||||||||||||||| Sbjct 1393 GATCCCGCACCCGGGATGCACCGACCCCCACAAACATCTCCACAAA 1438 >seq942746 Length=519 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 |||| |||| | || |||||||| ||||| | ||| ||||| ||||||| ||||| Sbjct 373 CCTCGTCTCTGCTGATGAGTTCATTGGAGAAAGTCAAACCAGGCATAAGACCCCTCTTCT 314 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 | | ||| | || || ||| || ||||| ||||||||||||||||| ||| ||||| Sbjct 313 TTAGCCAGAAGATGGCAGCAAAA-GACCCTGAGAAGAAGATACCCTCTACAGCAGCAAAA 255 Query 122797 GCAA 122800 |||| Sbjct 254 GCAA 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596879398987200