Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq456579 105 7e-18 seq3953357 87.8 2e-12 >seq456579 Length=1737 Score = 105 bits (116), Expect = 7e-18 Identities = 302/459 (66%), Gaps = 9/459 (2%) Strand=Plus/Plus Query 59659 ATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCG 59718 ||||||| | |||||| ||| |||| | |||||||| |||| ||||| |||| Sbjct 606 ATTGGGAAAGTCTCAATGACGGCGAGAAATATTTCATCTCCCACATCCTCGCCTTTTTCG 665 Query 59719 CGGCGAGTGATGGAATTGTGATGGAAAATATAG--ACATGAACTTTTCCAAGGATGTCCA 59776 ||| || || || || || | |||||| | | ||| | |||| | ||| ||||| Sbjct 666 CGGGAAGCGACGGGATCGTTGTCGAAAATCTGGCGACACGG--TTTTGTAGGGAAGTCCA 723 Query 59777 GATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGA 59836 |||| | || || |||| || |||| || |||| | | || |||||||| || Sbjct 724 GATTCCAGAAGCGCGGTTCTTTTACGGGTTTCAGATCATGATGGAAAACATCCACTCGGA 783 Query 59837 GACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTT 59896 | |||| || | || |||| | || ||||| | || || | || | Sbjct 784 AATGTACGGCCTTCTCATAGATACCTACATCCAGGATTCACGCGAAAAACGATATTTGCT 843 Query 59897 CCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT 59956 | || || || || ||||| || ||| | ||||| || |||||| || ||||| Sbjct 844 CAAAGCGATTGAAACTATTCCCGCGGTGAAAAAGAAAGCCGACTGGGCCCTGAGATGGAT 903 Query 59957 GAGTCCTGG---AGCATCATTTGC-ACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAA 60012 | | | | ||| || || || || | | ||| | ||||| || ||| ||||||| Sbjct 904 CAATGATAGTCGAGCCTCTTTCGCCACGA-GACTCGTCGCTTTCGCCATCGTCGAAGGAA 962 Query 60013 TCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGG 60072 | ||||| || || |||||| || || |||||| | || || | || || ||||| | Sbjct 963 TTTTCTTTTCCGGATCGTTCGCCGCGATATTCTGGTTGAAGAAAAGGGGTCTGATGCCCG 1022 Query 60073 GCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 | |||| ||||||||||| || || ||| ||||||| Sbjct 1023 GTCTGACCTTCTCCAACGAACTCATCAGCCGCGACGAGG 1061 >seq3953357 Length=757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 59988 ATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 || || ||||| ||||||||| |||||||||||||| || || || || |||||| Sbjct 252 ATTGCATTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGATCTTTTGCAGCCATCTTCTGG 193 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 |||||||| | || || | |||||| | | || ||||||| ||||| ||| ||||| Sbjct 192 ATCAAAAAGAGAGGGATCCTTCCGGGCATCACCTTTGCCAACGAACTGATCTCCAGGGAC 133 Query 60108 GAGGGCCTCCA 60118 || || || || Sbjct 132 GAAGGACTGCA 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521316036370080