Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq369660 100 3e-16 seq532358 95.1 1e-14 seq224863 84.2 2e-11 >seq369660 Length=5115 Score = 100 bits (110), Expect = 3e-16 Identities = 236/349 (68%), Gaps = 7/349 (2%) Strand=Plus/Plus Query 124551 TGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTG 124610 || |||||||| | |||||| | | || || |||| || | |||||||| || || Sbjct 3393 TGTTGCAACATCATCCACATTCCCCGCACATAATCCTTAGCATAACCCCAGTCCCGTTTT 3452 Query 124611 GCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTGTTC-CACTCC--GCCAAACCC 124667 |||||||| || || || | | | ||| | | ||| || ||| || | | | Sbjct 3453 GCATCCAGATTACCCAGATAAAGTTCCTTCTGCATTCCCTTCACAATCCTGGCTACAGCG 3512 Query 124668 AGTGTAATCTTGCGCGTCACAAAC-TCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAG 124726 | ||||| ||||| || ||||| ||||| || || || | || || || ||||| Sbjct 3513 CGGGTAATTTTGCGGGTAACAAAAGTCGGA-CCACGGCGGGGACTTTCATGATTAAACAG 3571 Query 124727 AATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCC 124786 || ||| |||| ||||| | ||||| || || || || || ||| ||| | || Sbjct 3572 GATACCATTACAGGCAAATAAACCGTAAGATTCCCGATAATTAACCGTTTGCCAGTGTCC 3631 Query 124787 AAAGAGCTTGG-ACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGG 124845 | | ||| | ||| || |||||| || || ||||| || || || |||| || |||| Sbjct 3632 GTAAACCTTCGCACAAGC-ATAGGGACTACGAGGGTAAAAAGGTGTAGTTTCTTTCTGGG 3690 Query 124846 TAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894 || ||||| ||||||||||| ||||||| ||| || ||||| || Sbjct 3691 GGATTTCCTGAACTTTCCCAAACATTTCCGAAGAACCTGCTTGATAAAA 3739 >seq532358 Length=311 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| || | ||| |||||||||||||| ||| ||| | ||||| || || Sbjct 109 GTGAAAATGTACCGTGGGCTAGCAGCATCCTTGCCGCCATGAAGCCTGGTACCAAACTGA 50 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTG 117411 ||| | |||| ||| ||||||| ||||||| ||| |||||||| || Sbjct 49 CCAATAGGCTGCAACAGGTTCAAGTTGTTGCTGCCAACAAAGTTCTG 3 >seq224863 Length=2999 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 117306 TGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTC 117365 ||||||||||||| | ||| ||||||||||| || ||| ||| || ||||| || || | Sbjct 594 TGAAAATGTAACGGGGGCTAGCAGCATCCTTACCGCCATGAAGTCGGGTACCAAACTGAC 653 Query 117366 CACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCA 117416 | |||| ||| || |||| ||||||| ||| |||||||| || | || Sbjct 654 CGACAGGCTGCAACAGATTCAAGTTGTTGCTGCCAACAAAGTTCTGTGNCA 704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520072157463600