Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq3964776 502 8e-138 >seq3964776 Length=1148 Score = 502 bits (556), Expect = 8e-138 Identities = 811/1149 (71%), Gaps = 19/1149 (2%) Strand=Plus/Minus Query 40710 GTGTCTGTCAGATTA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAA 40768 ||||||| ||| ||| || |||||| |||||||| || |||| ||| ||| ||||||| Sbjct 1147 GTGTCTGCCAGTTTAGATCTGAGCT-AAATTCTTCTCAGCCCAGATCGTTTTACCATCAA 1089 Query 40769 GTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGAT 40828 |||| |||||||| || |||||||| |||||||| || || ||||| ||||| | | | Sbjct 1088 GTAAAGTTGCCATTGGCGTTCTGCCGCAGCACATCTTGCCCTGATGAGTTCGCTCATTGT 1029 Query 40829 TATAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAA-ATCCGTATAAATT 40887 | ||||| | | ||| || || | ||| ||||| ||||||| ||| | ||| | | Sbjct 1028 TGTAATATTTAATCCATTCGTCCAGATCTTTTTGTAGC-TCGTTAATATCGGCATACAGT 970 Query 40888 TTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAG 40947 ||||| | || | | || || || ||||||| || || || ||||| || |||||| Sbjct 969 TTCTTGCGGAAGGTGATCTGATAGAACTCTTGTAGAATGGTCTTGTGGAAGCGCTCGCAG 910 Query 40948 ATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCT 41007 || ||||| || || |||||| | ||||||| |||||||| || |||||||| ||||| Sbjct 909 ATCCCATTGGTTTGCGGATGCATTGCTTTCGTCTTCGTATGATCAATGTCATTGATCGCC 850 Query 41008 AAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTT 41067 ||||| |||| |||||| || | || || |||||||| || |||| || || || Sbjct 849 AAATACAGCTGATAATCATGCTGCTCAACACGACCACAATACTCCGTTCCACGATCCGTC 790 Query 41068 AATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGC 41127 ||||| || ||||||||||| | || || ||| | ||||| ||| || || || Sbjct 789 AATATCCGCAACATCGGTAATTCATGTTGCTCGAAGAACGGTAATACTCGGTCGTTGAGG 730 Query 41128 ATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTG 41187 || || || | || | |||||| | || || | ||| || || ||||| ||| Sbjct 729 GCGTCGGCTGCCGTTATTGGTGTCTTCGTCGTGTACAATTTACAGAAGGCGACTTTGCTG 670 Query 41188 TAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAG 41247 || || || | ||| || || || ||||| ||||| || || ||||| |||||||| ||| Sbjct 669 TAGGTGTCGACAAATGTCTGCTGGTAAATCCGACCAACACCCTTGAGATTGCCCACGTAG 610 Query 41248 AAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATC 41307 || || ||||| ||||||||||| || || || ||||||||||| || || || Sbjct 609 AAGGTGTCTTGAGAGCCAAGATAACCGGGATGATGGGTTTCAATTTCCCCGCATGCTTCG 550 Query 41308 TCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGT 41367 ||||| | |||||| || | |||| ||||| | ||||| || || || || | Sbjct 549 TCATCATGTTTCTTCTTTTCAAGGGCTGCAACCTGGGCATCACTCAGAATTATCCCGTCA 490 Query 41368 TCTGCAACCAGTTTTTCCAGGGCGATTAA---TCTTTGCTTAAAATTGGCAAGATGATGA 41424 || || | | |||||| || |||| |||| ||||| || ||||| || Sbjct 489 GTAGCGACTCGCTCTTCCAGTGC-TTTAAGCCGCTTT--TTAAAGTTCTCAAGACCATTG 433 Query 41425 CGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCG 41484 |||||||| || || || ||||| | | |||||||||| |||| | | || |||||| Sbjct 432 CGTAACCAGATTGACCGAACACCACTGCCAGAAACAAAGACGCCTATTCTGCGCAGTTCG 373 Query 41485 TTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGC 41544 ||||| ||| ||| ||| || || | |||| ||| | | | || ||||| Sbjct 372 TTACTAGTTCTGTGCTGACCATGGGCTGGCTGCTCAATGGCATAACTAATGACCGCTTGT 313 Query 41545 TCTATTGCCTCATCAACACGATTTTTTAAGTT--GGGAAC-GCGTCTATTTTGATTCAGC 41601 ||||| | ||||| || |||||||| ||| ||| | ||| || || | | ||| Sbjct 312 TCTATCGTTTCATCGACTCGATTTTTGGTGTTAGGGGTTCTGCGGCTTTTGTTAATCA-- 255 Query 41602 AATGCTTCAACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTC 41661 ||| | || | || || | |||||| | |||| |||||||| ||||| || Sbjct 254 AATTC-TCGATCCCGCCATCATCAACCAGCTCACGATAGCGATAGAACGTATCCCGCGAT 196 Query 41662 ATTCCCATTACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAA 41721 | ||||| || ||||| |||| ||||| ||||| || ||||| |||||||||| | | Sbjct 195 ACGCCCATGACCTTGCATGCTTTAGAAACGTTACCGAGCTCTTCCGCTAAATTTAGCAGA 136 Query 41722 CCGGTCTTGTGTTTAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTT 41781 || | ||||||||||||| || ||| ||| || | |||||||||| ||||||||||| Sbjct 135 CCTGCTTTGTGTTTAATGATGGGATTGCTAGTATGGAGCATGAGAGTTACCTTTTTGTTT 76 Query 41782 AGA-TTGATTTTTGACACTCATATTCTAAACGGGAAACTCTCACTTTTTAGAG-TGAATT 41839 || || | || ||||| | | || ||||||| ||||||| ||| || || || | Sbjct 75 TGATTTAAGATTCGACAC-CTTTATCAAAACGGGTAACTCTCTCTTCTTCAAGAAGATAT 17 Query 41840 GTCAGATCA 41848 ||||||||| Sbjct 16 GTCAGATCA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158866644501684