Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_029002.1 Length=169223 Score E Sequences producing significant alignments: (Bits) Value seq3968060 367 1e-96 >seq3968060 Length=2354 Score = 367 bits (406), Expect = 1e-96 Identities = 579/824 (70%), Gaps = 23/824 (3%) Strand=Plus/Minus Query 13447 GGAATAAAAGCGTAGGGACCATAATCAAAACTTTCCCCAGTAATTGACATATTATCGGTA 13506 || ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 2307 GGCATAAATGCGTAAGGACCATAATCAAAACTTTCCCCTGTAATCGACATATTATCGGTA 2248 Query 13507 TTGAGAACCCCATGACAAAAACCTGCGGACATCCATTGGGCTGCTAATTTAGCGGTTCTT 13566 || | || ||||||||||| || || | |||||| || || ||||| | || | | Sbjct 2247 TTTAAGACACCATGACAAAACCCAGCAGCCATCCACTGAGCGGCTAAAGTGGCTACCCGT 2188 Query 13567 TCGATTAAAGCGGCGTAAAATTTTAAATAGCGATCACTA---TCTTGGGGATTGATTTCA 13623 | | || | ||||| | ||||||| | | ||| | | | | Sbjct 2187 TGCACCAATTCCCGATAAAAGGCGACGAAGCGATCGCCAGAGTCT-----AATAAATGGG 2133 Query 13624 GGATAATAATAAAT---AATCACATGATCGAGGAGTCTTTTAATTAAATC---GCTACGT 13677 || |||||||| || ||||||||| | |||| |||| || | ||| || || Sbjct 2132 GG----TAATAAATCTCAACCACATGATCTAAGAGTTTTTTGATCAGATCTGCGCGACCA 2077 Query 13678 TTAATA-TGAAATAAACGCTCAAAAGTCCCGAAACGAATATGAGAATTACTAACTCGAAT 13736 |||| || ||| ||||||||||| ||||| |||||||| || ||| | ||| | Sbjct 2076 A-AATAGTGCAAT---CGCTCAAAAGTTCCGAACCGAATATGCGATCGACTCATTCGCAC 2021 Query 13737 CATCACCGAAGATCGCGTCGGGGAAGGTTCATCGCCGCGCCAGAGAGCTTCCCCCGTTTC 13796 ||| |||||||| || || |||||||||||||| || ||||| | ||| || ||||| Sbjct 2020 CATTACCGAAGACCGGGTAGGGGAAGGTTCATCCCCCCGCCATAACTTTTCTCCGGTTTC 1961 Query 13797 CACCAAACTCAAACAGCGAGAGGTATTCACCCCTAAACCGCGTAAAGCTTCCCCGGCTAA 13856 | ||||| ||||| ||||| || |||||||| | | | | ||||| | ||||| Sbjct 1960 AATTAAACTTAAACATCGAGAAGTCCTCACCCCTTGTCTGTGGAGTGCTTCTGCTGCTAA 1901 Query 13857 GACTTCTCTAACTCCACCCTTGAGAGTTAACCTACCGTCGGCATGACGAGAATAGGGGGT 13916 ||||| | ||||| ||||| | ||| | | || |||||||| ||||| || || || Sbjct 1900 TACTTCCCGGACTCCCCCCTTTAAAGTCAGTCGGCCATCGGCATGGCGAGAGTAAGGAGT 1841 Query 13917 CCGTCCCGATCCTTTCGTACCAAAATCGTATAATTTGCCATCAATACCCCTAACTTGACC 13976 || |||||||| ||||||||||| || |||| ||||| || || | | || || Sbjct 1840 TGTACCAGATCCTTTAGTACCAAAATCATACAATTCCCCATCTATGCCGCGCATCTGTCC 1781 Query 13977 GTAGAGAAAACCGCGACCATCTCCCAAAAAAGGATTATACTCGCCAAATTGATAACCGTG 14036 || ||||| || ||||||||||| ||| ||||||||| || ||||| ||||| ||||| Sbjct 1780 ATACAGAAACCCACGACCATCTCCTAAACCAGGATTATATTCTCCAAACTGATAGCCGTG 1721 Query 14037 GTAACGCAGGGCCAAAAAGGGGGTCAGGGATTGAAATTTACCAAAAGCCTCGATAAAATG 14096 |||||||| |||||||| | |||| || |||||||||||| ||||| ||||||| Sbjct 1720 GTAACGCATCGCCAAAAACTGCGTCACACTTTCAAATTTACCAAAGGCCTCTATAAAATC 1661 Query 14097 CTCATCTAAGGTTAATTCTGGCTGGATTCCCACCAAAGGTAATAAAGCATCATTGCGAAA 14156 || ||| ||| || ||| | ||||||| | | || ||||||| || || Sbjct 1660 CTGATCCTGAGTTGGTTGTGGGTCAATTCCCAATTTGAGCAGCAATTCATCATTACGGAA 1601 Query 14157 ACGAAGGATATGACGGGGAAAATCCGCGGCTGCAACTTGATCATAGTATTGGTCCCCCAA 14216 ||| | ||||| | || || ||||| || || |||||| || | |||||||| Sbjct 1600 ACGCAAAATATGCAGCGGGAAGGAGGCGGCCGCTACGACATCATAATAATCATCCCCCAA 1541 Query 14217 GTCCTGCATGGCGCTTTCGTAAGGGAGACTGAGAAAGGGATTGG 14260 | || | ||| ||| || |||| ||||| ||||||| Sbjct 1540 GCTCTCAAAAGCGGGTTCATATTCGAGAAACAGAAAAGGATTGG 1497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514530965855760