Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_029100.1 Length=33399 Score E Sequences producing significant alignments: (Bits) Value seq987796 91.5 3e-14 seq2308981 84.2 4e-12 >seq987796 Length=100 Score = 91.5 bits (100), Expect = 3e-14 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 25489 AAAACGTAAACGGCATAAGCTCAAATGCGTTTAGCGTAAACAAAAAAGACGCGCTACCAG 25548 ||||| |||||||||| |||||||| || || ||||| || || || |||| | Sbjct 1 AAAACTTAAACGGCATTAGCTCAAACGCATTCAGCGTTAAAGGTCGCGATCCGTTACCGG 60 Query 25549 TTAAACTTAAAAAGGCTGAGCATGTTGGTAAGTGCAAGCA 25588 ||||||||||||| |||||||| ||||||||||| ||||| Sbjct 61 TTAAACTTAAAAAAGCTGAGCACGTTGGTAAGTGTAAGCA 100 >seq2308981 Length=118 Score = 84.2 bits (92), Expect = 4e-12 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 15994 TGAGTCGCACCCTCTGGCGCATTTTTAACGATTTCTTTTAACTGCCCTAATGTCTCCATT 16053 || || ||||| ||||||||||||| |||||| ||||||||||| ||| || |||||| Sbjct 111 TGTGTTGCACCATCTGGCGCATTTTCGACGATTGCTTTTAACTGCTCTAGAGTTTCCATT 52 Query 16054 ATTTA-TCACTCCACTCAACTTTACCGTAATTATCAATCACGCAATATTT 16102 | | | || | ||| |||||||| || |||||| || | |||| |||| Sbjct 51 ACTCACTCGC-CCATTCAACTTTGCCAAAATTATTTATGATGCAAGATTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101724537479524