Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq559689 127 5e-24 seq3496919 105 1e-17 seq396905 102 2e-16 seq3148421 87.8 4e-12 >seq559689 Length=1448 Score = 127 bits (140), Expect = 5e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| || || || |||||||| || || || ||||| ||||||| |||| | Sbjct 88 ACAAGATGTAGTGTTGACTCTTTCTGAATATTGTAATCACCAAGGGTTTGGCCATATCTA 147 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 || |||| || || |||||||| ||||| || || |||||||| |||||||||||||| Sbjct 148 AGTTGCTGACCAGCAAAGATAAGACGTTGCTGTTCTGGAGGAACACCTTCCTTGTCCTGT 207 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| ||| |||| || ||||||||||| ||||||||| ||||| Sbjct 208 ATCTTAGCTTTGACGTCTTGAATGGTGTCAGATGGTTCAACCTCAAGAGT 257 >seq3496919 Length=196 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| ||||| | | ||||||||||| || ||||| ||||| |||||| | | ||||| Sbjct 41 TAGAACAAGAAGTACTGTGGACTCTTTCTGCATGTTGTAATCAGCAAGGATTCGGCCATC 100 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||| || || || |||| ||| ||||| | ||| |||| || ||| |||| || Sbjct 101 TTGAAGCTGTTTACCAGCAAAGACAAGACGTTGCTTGTCTGGAGCAATACCTGCCTTTTC 160 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057 ||| ||||| ||| || | |||||||| ||||| Sbjct 161 CTGTATCTTAGCTTTGACATCTTCGATGGCCTCAGA 196 >seq396905 Length=1799 Score = 102 bits (112), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||| || || |||| ||||| || ||||| ||||| || ||| | |||||| | Sbjct 652 CAAGATGCAGTGTGGCTTCTTTCTGTATGTTGTAATCAGCTAGGATTTGGCCATCTCGAA 593 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 ||||||| || || |||| ||| ||||| || || ||| ||| |||||||||||||| | Sbjct 592 GCTGCTTACCAGCAAAGAGAAGACGTTGCTGTTCTGGATGAATACCTTCCTTGTCCTGTA 533 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 |||| ||| || |||| || | ||| ||||||||| |||| || || |||| Sbjct 532 TCTTAGCTTTAACACTTTCAATAGCCTCAAGTGGTTCAACCTCAAGAGGAATTGTTTTTC 473 Query 211087 C 211087 | Sbjct 472 C 472 >seq3148421 Length=155 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || |||||||| ||||| || || || |||| |||||||||||||| ||||| | Sbjct 17 CCAGCAAAGATAAGACGTTGCTGTTCTGGTGGAATACCTTCCTTGTCCTGTATCTTAGCT 76 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | || ||||| ||||||||||| | |||||| ||||| || || ||||| || Sbjct 77 GTGACATTTTCAATGGTGTCAGATGGGTTAACCTCAAGAGTAATTGTTTTTCCTGT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1100216524158930