Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq559689 89.7 1e-12 seq396905 89.7 1e-12 seq3967120 86.0 1e-11 >seq559689 Length=1448 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 ||||| || || || || ||||| || | ||||||||| | | ||| |||| | Sbjct 88 ACAAGATGTAGTGTTGACTCTTTCTGAATATTGTAATCACCAAGGGTTTGGCCATATCTA 147 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || |||| ||||| |||||||| ||||| || || || |||| |||||||||||| || Sbjct 148 AGTTGCTGACCAGCAAAGATAAGACGTTGCTGTTCTGGAGGAACACCTTCCTTGTCCTGT 207 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||||| || || ||| |||||||| || | ||| || || Sbjct 208 ATCTTAGCTTTGACGTCTTGAATGGTGTCAGATGGTTCAACCTC 251 >seq396905 Length=1799 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||| || || |||| |||||| || | |||||||| || | || |||||| | Sbjct 652 CAAGATGCAGTGTGGCTTCTTTCTGTATGTTGTAATCAGCTAGGATTTGGCCATCTCGAA 593 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||| |||| ||| ||||| || || || |||||||||||||||| || | Sbjct 592 GCTGCTTACCAGCAAAGAGAAGACGTTGCTGTTCTGGATGAATACCTTCCTTGTCCTGTA 533 Query 225626 TCTT 225629 |||| Sbjct 532 TCTT 529 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||| |||| ||| |||||| || | ||||| || | || || Sbjct 1216 ACGAAGGCGCAAAACAATATGGATTGTGCTTTCTTTCTGTATGTTGTAGTCAGACAGGGT 1157 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||| ||| ||||| | ||||| ||||||| || || ||||| || |||||||| Sbjct 1156 TCGGTCATTTTCAAGCTGATCACCAGCAAAGATAAAACGCTGCTGGTCTGGAGGAATACC 1097 Query 225612 TTCCTTGTCTTGGATCTT 225629 ||||||||| || ||||| Sbjct 1096 TTCCTTGTCCTGTATCTT 1079 >seq3967120 Length=1537 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || ||||||||||||||||| || || || || ||||| ||||| ||||| ||||| Sbjct 723 GAAGATCTGACCATCAGTAATAGAAATTACGTTAGTGGGGATGTAAGCGGAAACGTCACC 664 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 ||||| ||||||| | |||| |||||| Sbjct 663 AGCTTGGGTTTCGATGATTGGTAGGGCTGT 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1131898605027708