Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq760737 340 2e-88 seq456579 196 6e-45 seq817554 127 3e-24 seq3830724 109 7e-19 seq718041 109 7e-19 seq3953357 84.2 3e-11 >seq760737 Length=2966 Score = 340 bits (376), Expect = 2e-88 Identities = 619/898 (69%), Gaps = 21/898 (2%) Strand=Plus/Minus Query 47836 ACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTT 47895 ||||||| || |||||| || || || || | ||| || ||||| |||| ||| |||| Sbjct 1554 ACATAACCCCTGATTTTTGGTACTCGCCAACTCTTTTTTCAAAAAAGTTAGATTTCCCTT 1495 Query 47896 CCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATC 47955 | | ||| ||||| |||||||| ||||| || || || | | | |||||| | | Sbjct 1494 CAATTGAAATATTATCCATAAAGTCAAACGGGTTTTTAGCGCGAAATAACTTTTTACAAC 1435 Query 47956 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAAT 48015 | |||||| || || | ||||| || ||||||||||| |||||| | || || Sbjct 1434 CCAATTCTACAAGAAGACGGTCTGCCACAAATTCTATATACTGTTTCATAAGATCTTTAT 1375 Query 48016 TCATTCCTATAAGTTTAACTGGTAGAGCCT-CCGT---AAGAAACTCTTGTTCGATAGTG 48071 ||||||| || | |||| || || | |||| || ||| |||| ||||||| | Sbjct 1374 TCATTCCAATCATTTTATTCGG----GCATGCCGTTTCAAAAAAATCTTTTTCGATATCG 1319 Query 48072 ACAGCATCC---ACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGT 48128 || || || || ||| | | | | | ||| | | | | | || | | | Sbjct 1318 ACTGCGTCACCAACAATTTTGTAAATGATGGATTCATTCGGTTTTTGTTTTAAGCACTCT 1259 Query 48129 TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTA 48188 |||||| | || | |||||| ||||| | ||||| |||||| |||||||||||| Sbjct 1258 CTAAACACAAGGCAAGAAAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTT 1199 Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248 ||||| ||||| || || | | || | ||||| ||||||||||| || ||||| ||| Sbjct 1198 GAAAAAGTGAGTCCTGGAAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGAT 1139 Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT 48308 ||| |||| || ||||||||||| ||||| ||| | | |||||| | || || | Sbjct 1138 CCACAAAAAAAAATGCCTTCTACACATGCAAAAGCGATTAACCTCTCTGC--AAATGAGT 1081 Query 48309 TCGTTG-TGTA-TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 | | || | |||| | ||||||||||||||||| || || ||||| | |||| Sbjct 1080 TATCAGATGCAATCCAAGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTTT 1021 Query 48367 CTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAA 48426 | || || ||||| ||| | ||||||||| ||||| | ||||| || ||||| | Sbjct 1020 CGATCGCGTTAAAAAGACACATTTTTTCATCTTCGTCTTTGATATAAGTTTCAATTAACA 961 Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486 ||||||||||| | ||||||||||| || || |||||||| || ||||| ||| | Sbjct 960 AGCTATACATTTCCGTATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTTTA 901 Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546 ||||| || || || || | ||||||| | | | ||| || ||| || | || Sbjct 900 TTTCTGCAATTTGAACTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCAAT 841 Query 48547 CACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT 48606 || | ||||| || ||||||| | || || || ||||| | | ||| | || Sbjct 840 CAGCATTTGCAAAGAAAGCTAATATGTACTTGATGAATGTCTTTTCATCTGTAGTTAATT 781 Query 48607 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 | |||||| | | ||| |||| || ||| ||||| | | ||||||||||||| |||| Sbjct 780 GGTACCAGTCTTGTAAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGAAGCCT 721 Query 48667 CTGCTTTTTTATACATATTCC---ATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 ||||||||||||||| ||| || ||||| ||||| ||||| || | |||||| Sbjct 720 GTGCTTTTTTATACATTGTCCAAAATTTATCA---TATTGTATTGGAAATAGAACAAA 666 >seq456579 Length=1737 Score = 196 bits (216), Expect = 6e-45 Identities = 403/599 (67%), Gaps = 9/599 (2%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| |||||| || |||||||| || | | || || | || || | |||||| || Sbjct 1092 AACAATAAACAAGCGAAATCACAGTGTAACGCCTCGTCGCGGCTGATGAGTTCGTTGGAG 1033 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || ||||||||||| || || | ||| || | ||| ||||| || ||||| ||||| Sbjct 1032 AAGGTCAGACCGGGCATCAGACCCCTTTTCTTCAACCAGAATATCGCGGCGAACGATCCG 973 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT--- 48308 |||||||| || ||||| ||| || || ||| |||||| || || |||| Sbjct 972 GAAAAGAAAATTCCTTCGACGATGGCGAAAGCGACGAGTCTCGTGGCGAAAGAGGCTCGA 913 Query 48309 ---TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 || ||| ||||| | | ||||| || || ||||| || || || || ||| Sbjct 912 CTATCATTG---ATCCATCTCAGGGCCCAGTCGGCTTTCTTTTTCACCGCGGGAATAGTT 856 Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAA 48425 || || || || | | | | |||||| ||| | | ||| |||||||| | | Sbjct 855 TCAATCGCTTTGAGCAAATATCGTTTTTCGCGTGAATCCTGGATGTAGGTATCTATGAGA 796 Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC 48485 || | |||||||| ||||| || ||||| || |||||||| |||||||| | | | Sbjct 795 AGGCCGTACATTTCCGAGTGGATGTTTTCCATCATGATCTGAAACCCGTAAAAGAACCGC 736 Query 48486 GCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCA 48545 ||||||| ||||| || ||| ||||||| ||| |||| ||| || || || || Sbjct 735 GCTTCTGGAATCTGGACTTCCCTACAAAACCGTGTCGCCAGATTTTCGACAACGATCCCG 676 Query 48546 TCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT 48605 || || | || ||||| || | | || || |||||||| ||| | | | || Sbjct 675 TCGCTTCCCGCGAAAAAGGCGAGGATGTGGGAGATGAAATATTTCTCGCCGTCATTGAGA 616 Query 48606 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCC 48665 | | ||| | ||||||| | | ||| || || | | |||||||| || ||| Sbjct 615 CTTTCCCAATGGGGTTTATCTTTGGCGAGATCAACCTCAGCCGTCGTCCAAAAAGAAGCC 556 Query 48666 TCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 || ||| || ||||| ||||| | ||| |||||| || |||||||| || ||||| Sbjct 555 TCCGCTCGCTTGTACATTTTCCACACATCTTCGTATTGTATCGGGAAAATGACGAATCT 497 >seq817554 Length=629 Score = 127 bits (140), Expect = 3e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48532 CATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTT 48591 |||| || || || |||||||||||||| || || || |||||| ||||| | | | Sbjct 265 CATTGACGATACCGTCACTAGCAGCAAAGAAGGCCAACACATGTGAGATAAAGTGCCTCT 324 Query 48592 CGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 48651 ||||| | |||| || | ||||| || || ||||| |||| ||| || ||||| | | Sbjct 325 CGTTGTCATTCAGCTTCTCCCAGTGGTTCATGTCTTTGGATAGATCAACCTCTTCCACCG 384 Query 48652 TCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGA 48711 |||| |||||||||||||| || || ||||| |||| ||||| | ||||||| |||| Sbjct 385 TCCAGAATGATGCCTCTGCCTTCTTGTACATCATCCAGATATCTTGGAATTGGATGGGGA 444 Query 48712 AAATAACAAA 48721 | | ||||| Sbjct 445 AGACGACAAA 454 >seq3830724 Length=343 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| ||||| ||||||||||| || | ||||| || | ||| || | |||||| ||| Sbjct 200 AACAGCAAACAGGCAAAATCACAGTGCAACCCTTCGTCGCGACTGATGAGTTCGTTGGAA 259 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | || ||||| | ||| |||||||| | ||| ||||| || |||||||| || Sbjct 260 AACGTCAATCCCGGCATCAATCCTCGTTTTTTCATCCACAATATGGCGGCGAAAGAACCC 319 Query 48252 GAAAAGAATATGCCTTCTAC 48271 ||||| |||| |||||||| Sbjct 320 GAAAAAAATACACCTTCTAC 339 >seq718041 Length=1499 Score = 109 bits (120), Expect = 7e-19 Identities = 153/211 (73%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 78174 TATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTT 78233 ||||| |||||||| || || || ||||||||||| || | || || ||||| ||||| Sbjct 392 TATCTTGCGGTGTTGTTGTATACCCTCAACATTGGTATTAAGCCATTTGATGTACCATTG 451 Query 78234 GTTCCAGAAATATAACTTCCACTTGCGCGAAT--ATTACTAATGGATATCCCTATTCCTC 78291 || |||| |||||| |||||| ||| | ||| | | || | | |||| || | Sbjct 452 GTGCCAGCAATATAGCTTCCAGATGCTCTAATGCAGTGAACATTG--AGGCCTACACCCC 509 Query 78292 CTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGT 78351 |||| |||| || || || ||||| | |||| ||| |||||||| || |||||||||| Sbjct 510 CTGCTGTCTTTGAGATGAGGGCGCACTGCTTCAGTGTGTCGTAGATTCCTTCTATACTGT 569 Query 78352 C--ATCCATCATGTTAAGAAGAAAACAGCTA 78380 | || | |||| | || || ||||| ||| Sbjct 570 CTGATGC--CATGGTGAGCAGGAAACAACTA 598 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| ||||||||||| ||||| || || ||||| |||||||| || ||||| || | || Sbjct 1332 AGTGCCTGCATTAAACAATGTGGGTGAGGCATGTGTAAACCACTTCTCAGAGAGCAAGTT 1391 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || || |||||||| ||| ||||| || ||| || || || ||||| | ||||| Sbjct 1392 ATAGGTCTCAATAGCACCTTCAATGTCATTTTCATGGATGCCAACTGCTACCCTCATCAG 1451 Query 78518 CATATGCTGAGGTCTTTCA 78536 ||| || || |||| |||| Sbjct 1452 CATGTGTTGGGGTCGTTCA 1470 >seq3953357 Length=757 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || || || || ||||| || || || | |||||| | ||| |||| Sbjct 106 ACAAGCAAAGTCGCAGTGCAGTCCTTCGTCCCTGGAGATCAGTTCGTTGGCAAAGGTGAT 165 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || || | | || | ||||||| ||| || || || || ||||||||||| ||||| Sbjct 166 GCCCGGAAGGATCCCTCTCTTTTTGATCCAGAAGATGGCTGCAAAAGATCCAGAGAAGAA 225 Query 48260 TATGCCTTCTACGGCCGCAAATGC 48283 || ||||| ||||| |||||||| Sbjct 226 GATCCCTTCCACGGCGGCAAATGC 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 660210778812480