Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq72101 100 3e-16 seq70036 100 3e-16 >seq72101 Length=85746 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||| | || ||||| |||||||| |||||||| || | ||||| Sbjct 42105 TCATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCTTCTTC 42164 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 |||||||| || |||||||| || || || || || || ||||| |||| || ||||| Sbjct 42165 AACCAGAAGATAGCAGCAAAGGAACCTGAGAAAAAGATGCCCTCGACAGCGGCGAAAGCA 42224 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCT 16405 | | |||||| | |||| |||| | | | ||||| || || |||| || || Sbjct 42225 ACCACTCGTTCACCAAACGTGGCATTGTCAGCATTGATCCAGTTGAGTGCCCAATCTGCC 42284 Query 16406 TTTTGTTT 16413 || ||||| Sbjct 42285 TTCTGTTT 42292 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 16452 CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTA 16511 |||| || |||| || | || || || ||||| ||||| ||||||||||||||||| | Sbjct 43096 CTTTCTCTAGAATCTC--TGATGTATGTGTCAATGAGTAAGCTGTACATTTCTGAGTGGA 43153 Query 16512 TGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 |||| || ||||| ||||| || ||||||||||| Sbjct 43154 TGTTTTCCATGGCAATCTGGAACCCATAGAAGCA 43187 >seq70036 Length=130556 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||| | || ||||| |||||||| |||||||| || | ||||| Sbjct 53203 TCATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCTTCTTC 53144 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 |||||||| || |||||||| || ||||| || || || ||||| |||| || ||||| Sbjct 53143 AACCAGAAGATAGCAGCAAAGGAACCCGAGAAAAAGATGCCCTCGACAGCGGCGAAAGCA 53084 Query 16346 ATTAATCGTTCCGCGTACGTAGCAT 16370 | | |||||| | |||| |||| Sbjct 53083 ACCACTCGTTCACCAAACGTGGCAT 53059 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 16452 CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTA 16511 |||| || ||| | ||| | ||| || ||||||||||| ||||||||||||||||| | Sbjct 52295 CTTTCTCTTGAGTCTCGGATGTAT--GTGTCAATCAGTAAGCTGTACATTTCTGAGTGGA 52238 Query 16512 TGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 |||| || || || ||||| |||||||||||||| Sbjct 52237 TGTTTTCCATTGCAATCTGGAATCCATAGAAGCA 52204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510930499694720