Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq72101 125 8e-24 seq70036 125 8e-24 seq39745 98.7 1e-15 seq8201 98.7 1e-15 >seq72101 Length=85746 Score = 125 bits (138), Expect = 8e-24 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 ||| || || || || || |||||||| ||||| || ||||| |||||| ||||| | Sbjct 44438 ATTCTCGTTAACGATGCCATCACTGGCAGCAAAGAAGGCCAACACATGTGAAATAAAGTG 44497 Query 24581 TTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 24639 || ||||| |||| || || | ||||| | || || || || | ||||||||| | Sbjct 44498 CTTCTCGTCCT-TGTTGAGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACTTCCT 44556 Query 24640 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAA 24699 | |||||||| ||||| ||||||||||| || ||||| ||||||||| || |||| | Sbjct 44557 CGACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGGA 44616 Query 24700 TTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 24745 |||| || || || |||| | ||||| | | ||| | ||||| Sbjct 44617 TTGGGAAGATGACGAATCGACGGGGATTCTCTCTAAGTAGGGGTTC 44662 >seq70036 Length=130556 Score = 125 bits (138), Expect = 8e-24 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 ||| || || || || || |||||||| ||||| |||||||| ||||| ||||| | Sbjct 51607 ATTCTCGTTGACGATGCCATCACTGGCAGCAAAGAACGCCAACACATGCGAAATAAAGTG 51548 Query 24581 TTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 24639 || ||||| |||| || || | ||||| | || || || || | |||||| || | Sbjct 51547 CTTCTCGTCCT-TGTTGAGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACCTCCT 51489 Query 24640 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAA 24699 | |||||||| ||||| ||||||||||| || ||||| ||||||||| || |||| | Sbjct 51488 CGACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGGA 51429 Query 24700 TTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 24745 |||| || || ||||||| | ||||| | | ||| | ||||| Sbjct 51428 TTGGGAAGATGACAAATCGACGGGGATTCTCTCTAAGTAGGGGTTC 51383 >seq39745 Length=16847 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| || ||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 5996 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 5937 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||||| | || || ||| || || || ||| | || | || || || | |||| | Sbjct 5936 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCTGTCTCTACTTGGGCT 5877 Query 53870 TCTATAATCGCTTTCCA 53886 || || || |||||||| Sbjct 5876 TCAATGATTGCTTTCCA 5860 >seq8201 Length=93372 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| || ||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 62756 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 62815 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||||| | || || ||| || || || ||| | || | || || || | |||| | Sbjct 62816 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCCGTCTCTACTTGGGCT 62875 Query 53870 TCTATAATCGCTTTCCA 53886 || || || |||||||| Sbjct 62876 TCAATGATTGCTTTCCA 62892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593159820622080