Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1757 100 2e-16 seq1554 100 2e-16 >seq1757 Length=74305 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| ||||| | || || || | || || || || || || Sbjct 33028 GTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCAAGTTGCTTTCCA 33087 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| | ||||| || ||| | ||| |||||||| |||||| |||| Sbjct 33088 GCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTC 33147 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| || ||| || | ||| || || ||||| |||| ||| Sbjct 33148 ACATTCTCGATTGTGTCACTTGGTTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTT 33207 Query 21159 TTGACAAATATTTGCATTTTGAA 21181 |||||||| || ||||||||||| Sbjct 33208 TTGACAAAGATCTGCATTTTGAA 33230 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 ||| | ||| ||||| || || ||||| ||||| | || || || | || || || || Sbjct 30229 ATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCAAGTTG 30288 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 || || ||| | ||||| | ||||| || ||| | |||||| ||||| |||||| Sbjct 30289 CTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCTT 30348 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 | ||| || | | | ||| |||| || || || | ||||||||||||||| || Sbjct 30349 TGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATGGTCTTGCCAGT 30408 Query 21152 TAACGTTTTGACAAATATTTGCAT 21175 | || ||||| || |||||||| Sbjct 30409 GAGGGTCTTGACGAAGATTTGCAT 30432 >seq1554 Length=107351 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| ||||||| || || || | || || || || || || Sbjct 8214 GTGGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGGCCATCTTCAAGTTGCTTTCCA 8155 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| | ||||| || ||| | ||| |||||||| |||||| |||| Sbjct 8154 GCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTC 8095 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| || ||| || | ||| || || ||||| |||| ||| Sbjct 8094 ACATTCTCAATTGTGTCACTTGGTTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTT 8035 Query 21159 TTGACAAATATTTGCATTTTGAA 21181 |||||||| || ||||||||||| Sbjct 8034 TTGACAAAGATCTGCATTTTGAA 8012 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 ||| | ||| ||||| || || ||||| ||||| | || || || | || || || || Sbjct 10276 ATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCAAGTTG 10217 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 || || ||| | ||||| | ||||| || ||| | |||||| ||||| |||||| Sbjct 10216 CTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCTT 10157 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 | ||| || | | | ||| |||| || || || | ||||||||||||||| || Sbjct 10156 TGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATGGTCTTGCCAGT 10097 Query 21152 TAACGTTTTGACAAATATTTGCAT 21175 | || ||||| || |||||||| Sbjct 10096 GAGGGTCTTGACGAAGATTTGCAT 10073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421869646886336