Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1554 132 7e-26 seq1757 120 5e-22 seq27477 93.3 6e-14 >seq1554 Length=107351 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || ||||| || || || | ||| ||||| ||| | Sbjct 13197 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAACCAAGT 13256 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| || || |||||||||||||| || || || ||||| Sbjct 13257 GACACTATTGAAAATGTAAAAGCTAAGATCCAAGATAAAGAAGGCATCCCCCCAGATCAG 13316 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || ||||| ||| | || ||| |||| || | |||||| || Sbjct 13317 CAACGTTTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGCACCCTTTCAGATTACAAC 13376 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| ||||||||| | ||| | || || ||| |||| |||||| Sbjct 13377 ATCCAAAAGGAATCAACTCTCCATCTTGTCTTGCGTCTACGTGGTGGT 13424 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || |||||||| ||||||||||| || | ||| | ||| ||| Sbjct 8017 AATGCAGATCTTTGTCAAAACACTAACTGGCAAAACTATCACCCTTGAGGTGGAACCAAG 8076 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| ||| | ||| || || ||||| || || || || || || ||||| Sbjct 8077 TGACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCA 8136 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| ||||| ||||| ||| | || ||| | || ||||| || || || Sbjct 8137 GCAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCGGACTACAA 8196 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| | || | ||| | || |||||||| Sbjct 8197 CATCCAGAAGGAATCCACACTCCATCTCGTCCTGCGTCTCCGTGGTGGTAT 8247 Score = 113 bits (124), Expect = 7e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 ||||||||||||| || | ||| | ||| ||| |||||| ||| ||| | || | Sbjct 10747 CAGGCAAAACTATCACCCTTGAGGTAGAACCAAGTGATACCATTGAGAATGTCAAGGCTA 10806 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 | || ||||| |||||||| || || || ||||| ||| | ||||| || || ||||| | Sbjct 10807 AGATCCAAGACAAAGAAGGCATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAGC 10866 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 || | || ||| | || ||||| ||| || || || || ||||| || ||| | ||| Sbjct 10867 AACTTGAAGATGGCCGTACATTGTCAGACTACAACATCCAGAAAGAGTCCACTCTCCATC 10926 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||| | || |||||||| Sbjct 10927 TCGTCTTGCGTCTCCGTGGTGGTAT 10951 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 ||||||||||||| || |||| | ||| ||| ||| |||||| ||| | || | Sbjct 9120 CAGGCAAAACTATCACCCTAGAAGTAGAACCAAGTGACACAATTGAGAATGTTAAGGCTA 9179 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 | || ||||| ||||||||||| || || ||||| || | ||||| || || ||||| | Sbjct 9180 AGATCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAGCGTCTTATCTTCGCTGGAAAGC 9239 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 || | || ||| | || ||||| || || || || || ||||| || ||| | ||| Sbjct 9240 AACTTGAAGATGGCCGTACATTGTCCGACTACAACATCCAGAAAGAGTCCACTCTTCATC 9299 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||| | || |||||||| Sbjct 9300 TTGTCTTGCGTCTTCGTGGTGGTAT 9324 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 ||||||||||||| || | ||| | ||| ||| ||| || ||| ||| | || | Sbjct 9870 CAGGCAAAACTATCACCCTTGAGGTAGAACCAAGTGACACCATTGAGAATGTCAAGGCTA 9929 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 | || ||||| |||||||| || || || ||||| ||| | || || || || ||||| | Sbjct 9930 AGATCCAAGACAAAGAAGGCATCCCCCCAGATCAGCAACGTCTCATCTTCGCTGGAAAGC 9989 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 || | || ||| | || ||||| ||| || || ||||| ||||| || ||| | ||| Sbjct 9990 AACTTGAAGATGGCCGCACATTGTCAGACTACAACATTCAGAAAGAGTCCACTCTCCATC 10049 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||| | || |||||||| Sbjct 10050 TTGTCTTGCGTCTCCGTGGTGGTAT 10074 >seq1757 Length=74305 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || |||||||| ||||||||||| || | ||| | ||| ||| Sbjct 33225 AATGCAGATCTTTGTCAAAACACTAACTGGCAAAACTATCACCCTTGAGGTGGAACCAAG 33166 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| || || ||||| || || || || || || ||||| Sbjct 33165 TGACACAATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCA 33106 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| ||||| ||||| ||| | || ||| | || ||||| ||| || || Sbjct 33105 GCAACGTCTTATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACATTGTCAGACTACAA 33046 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| | || | ||| | || |||||||| Sbjct 33045 CATCCAGAAGGAATCCACACTCCATCTCGTCCTGCGTCTCCGTGGTGGTAT 32995 Score = 113 bits (124), Expect = 7e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 ||||||||||||| || |||| | ||| ||| ||| |||||| ||| | || | Sbjct 32127 CAGGCAAAACTATCACCCTAGAAGTAGAACCAAGTGACACAATTGAGAATGTTAAGGCTA 32068 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 | || ||||| ||||||||||| || || ||||| || | ||||| || || ||||| | Sbjct 32067 AGATCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAGCGTCTTATCTTCGCTGGAAAGC 32008 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 || | || ||| | |||||||| || || || || || ||||| || ||| | ||| Sbjct 32007 AACTTGAAGATGGCCGAACATTGTCCGACTACAACATCCAGAAAGAGTCCACTCTTCATC 31948 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||| | || |||||||| Sbjct 31947 TTGTCTTGCGTCTTCGTGGTGGTAT 31923 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 ||||||||||||| || | ||| | ||| ||| ||| || ||| ||| | || | Sbjct 29748 CAGGCAAAACTATCACCCTTGAGGTAGAACCAAGTGACACCATTGAGAATGTCAAGGCTA 29689 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 | || ||||| ||||||||||| || || ||||| ||| | ||||| || || ||||| | Sbjct 29688 AGATCCAAGACAAAGAAGGTATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAGC 29629 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 | | || ||| | || ||||| ||| || || || || ||||| || ||| | ||| Sbjct 29628 AGCTTGAAGATGGCCGCACATTGTCAGACTACAACATCCAGAAAGAGTCCACTCTCCATC 29569 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||| | || |||||||| Sbjct 29568 TCGTCTTGCGTCTCCGTGGTGGTAT 29544 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 ||||||||||||| || | ||| | ||| ||| ||| || ||| ||| | || | Sbjct 31060 CAGGCAAAACTATCACCCTTGAGGTAGAACCAAGTGACACCATTGAGAATGTCAAGGCTA 31001 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 | || ||||| || ||||| || || || ||||| ||| | ||||| || || ||||| | Sbjct 31000 AGATCCAAGACAAGGAAGGCATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGAAAGC 30941 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 || | || ||| | || ||||| ||| || || || || || ||||| || | ||| Sbjct 30940 AACTTGAAGATGGCCGCACATTGTCAGACTACAACATCCAGAAGGAATCCACACTCCATC 30881 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | ||| | ||| | || |||||||| Sbjct 30880 TCGTTCTGCGTCTCCGTGGTGGTAT 30856 >seq27477 Length=28462 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 205645 CTAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGA 205704 ||| | || || || |||| ||| | | ||||| |||| ||| ||||| | ||||| Sbjct 277 CTACACTCTGGATTGGTTTTAATTCTGTCTATAACTTGTGCTAACTGATCCACCCCTTGG 336 Query 205705 TTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCA 205764 | || |||| ||| | ||| || | || | ||||||||||||||||||||||| || Sbjct 337 TCAGTGTAATCTGTGTGCATGTCTTTGTACTCGGCACCAAAATGACGCCATTGAAAGCCG 396 Query 205765 TAAACTGGACCTAAATCACCT 205785 || ||||| |||| ||||||| Sbjct 397 TAGACTGGTCCTAGATCACCT 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754741187532800