Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2599 100 3e-16 seq29058 98.7 1e-15 seq20558 98.7 1e-15 seq20014 98.7 1e-15 seq75343 91.5 2e-13 seq43034 91.5 2e-13 seq74802 86.0 7e-12 seq36880 86.0 7e-12 seq1554 82.4 9e-11 >seq2599 Length=53517 Score = 100 bits (110), Expect = 3e-16 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60057 AAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| ||| | |||| |||||| |||||| ||||||||||||||||||||| ||| Sbjct 46913 AAAAATTCCTCTTCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGAATA 46972 Query 60116 CTCACCACTATACTACCGAGGATTG 60140 ||||||||||||||||||| |||| Sbjct 46973 ATCACCACTATACTACCGAGAATTG 46997 >seq29058 Length=145958 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4304 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4245 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 4244 TACTATCGAGGATT 4231 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4923 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4864 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 4863 TACTATCGAGGATT 4850 >seq20558 Length=174578 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 114284 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 114225 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 114224 TACTATCGAGGATT 114211 >seq20014 Length=147264 Score = 98.7 bits (108), Expect = 1e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 140081 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 140140 Query 60126 TACTACCGAGGATTGAATA 60144 ||||| |||||||| |||| Sbjct 140141 TACTATCGAGGATT-AATA 140158 >seq75343 Length=74933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| | || Sbjct 66827 GGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCTAG 66768 Query 60136 GATTG 60140 ||||| Sbjct 66767 GATTG 66763 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| | || Sbjct 67432 GGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCTAG 67373 Query 60136 GATTG 60140 ||||| Sbjct 67372 GATTG 67368 >seq43034 Length=15484 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| | || Sbjct 14242 GGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCTAG 14183 Query 60136 GATTG 60140 ||||| Sbjct 14182 GATTG 14178 >seq74802 Length=71931 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| | || Sbjct 71574 GGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCTAG 71515 Query 60136 GATTG 60140 || || Sbjct 71514 GACTG 71510 >seq36880 Length=106206 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| | || Sbjct 26266 GGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCTAG 26207 Query 60136 GA 60137 || Sbjct 26206 GA 26205 >seq1554 Length=107351 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || | || |||||| || | ||| | || |||||||| || |||||| Sbjct 13429 TATTGACCACCACGTAGACGCAAGACAAGATGGAGAGTTGATTCCTTTTGGATGTTGTAA 13370 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | || || || | || || || ||||| |||||||| || | || ||||| || Sbjct 13369 TCTGAAAGGGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCT 13310 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 | || | || || || || ||| || ||| | | | | ||||| || | | Sbjct 13309 GGGGGGATGCCTTCTTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTGTCACTTGGT 13250 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 13249 TCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 13197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571276546186880