Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq70036 107 2e-18 seq72101 100 3e-16 seq37837 87.8 2e-12 seq21453 87.8 2e-12 >seq70036 Length=130556 Score = 107 bits (118), Expect = 2e-18 Identities = 104/131 (79%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 14456 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 14515 ||||||| ||| || | | ||||||| ||||| |||||||| |||||||| ||||| ||| Sbjct 52293 TTCTCTTGAGT-CTCGGA-TGTATGTGTCAATCAGTAAGCTGTACATTTCTGAGTGGATG 52236 Query 14516 TTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAG 14575 |||||||| || ||||| || ||||| || || || ||||||| | || |||||| | Sbjct 52235 TTTTCCATTGCAATCTGGAATCCATAGAAGCACCTTGCTTCTGTGCTCTGCACCTCTTGG 52176 Query 14576 TAAAATCTTTC 14586 ||||||||| Sbjct 52175 CTAAATCTTTC 52165 >seq72101 Length=85746 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 |||||||| ||||| |||||||| |||||||| ||||| ||||||||||| || ||||| Sbjct 43114 ATGTATGTGTCAATGAGTAAGCTGTACATTTCTGAGTGGATGTTTTCCATGGCAATCTGG 43173 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTC 14586 || ||||| || || || ||||||| | || || ||| | ||||||||| Sbjct 43174 AACCCATAGAAGCACCTTGCTTCTGTGCTCTGCACTTCTTGGCTAAATCTTTC 43226 >seq37837 Length=14246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 || ||||||||||| ||||| || |||||||| || || || ||||| ||||| || || Sbjct 4722 TTGTTGATATTCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCTTCTAGTGAGATGTT 4781 Query 13972 TTCCATAAAATCAAATGGATTTG 13994 |||||| ||||||||||| |||| Sbjct 4782 TTCCATGAAATCAAATGGGTTTG 4804 >seq21453 Length=27831 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 || ||||||||||| ||||| || |||||||| || || || ||||| ||||| || || Sbjct 7121 TTGTTGATATTCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCTTCTAGTGAGATGTT 7062 Query 13972 TTCCATAAAATCAAATGGATTTG 13994 |||||| ||||||||||| |||| Sbjct 7061 TTCCATGAAATCAAATGGGTTTG 7039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481889204593280