Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1554 98.7 8e-16 seq1757 95.1 9e-15 >seq1554 Length=107351 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || ||||| ||||| || || ||||||||||| | || ||| | |||||| | ||| Sbjct 8220 TGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGGCCATCTTCAAGTTGC 8161 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| ||||||| | ||| ||||| ||| | ||| ||||| || || | | Sbjct 8160 TTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCT-T 8102 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | ||| ||||||| || || |||| |||||| ||||||| || Sbjct 8101 GGCTTTCACATTCTCAATTGTGTCACTTGGTTCCACCTCAAGGGTGATAGTTTTGCCAGT 8042 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 | |||||| ||||| || |||||||| ||| Sbjct 8041 TAGTGTTTTGACAAAGATCTGCATTTTGAAA 8011 Score = 87.8 bits (96), Expect = 1e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || |||||||| ||||||||||||||||||| || ||| | |||||| | |||| Sbjct 18026 TGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTGCGGCCATCTTCAAGTTGT 17967 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC-GGCAATTTG 18241 || || || ||||||| | ||| ||||| ||| | ||||||||| || | | |||| Sbjct 17966 TTTCCAGCGAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGGATTTTG 17907 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCC 18298 | ||| || | ||| ||||| | || || |||| ||| ||| |||| || Sbjct 17906 GT-CTTTACATTCTCAATTGTGTCGCTTGGTTCTACCTCAAGGGTTATGGTTTTACC 17851 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||| || ||||||||||| | || ||| | |||||| | ||| Sbjct 10275 TGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCAAGTTGC 10216 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| ||||||| | ||| ||||| ||| | |||||| || || || | | Sbjct 10215 TTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCT-T 10157 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || || | | ||| |||||||| || || |||| ||| ||| | ||||| || Sbjct 10156 TGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATGGTCTTGCCAGT 10097 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | || || || || |||||||| Sbjct 10096 GAGGGTCTTGACGAAGATTTGCAT 10073 >seq1757 Length=74305 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || ||||| ||||| || || ||||||||||| | || ||| | |||||| | ||| Sbjct 33022 TGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCAAGTTGC 33081 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| ||||||| | ||| ||||| ||| | ||| ||||| || || | | Sbjct 33082 TTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCT-T 33140 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | | ||||||| || || |||| |||||| ||||||| || Sbjct 33141 GGCTTTCACATTCTCGATTGTGTCACTTGGTTCCACCTCAAGGGTGATAGTTTTGCCAGT 33200 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 | |||||| ||||| || |||||||| ||| Sbjct 33201 TAGTGTTTTGACAAAGATCTGCATTTTGAAA 33231 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||| || ||||||||||| | || ||| | |||||| | ||| Sbjct 30230 TGGAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCAAGTTGC 30289 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| ||||||| | ||| ||||| ||| | |||||| || || || | | Sbjct 30290 TTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCT-T 30348 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || || | | ||| |||||||| || || |||| ||| ||| | ||||| || Sbjct 30349 TGCTTTTACATTTTCAATAGTGTCACTTGGTTCAACCTCAAGGGTAATGGTCTTGCCAGT 30408 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | || || || || |||||||| Sbjct 30409 GAGGGTCTTGACGAAGATTTGCAT 30432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378994038089520