Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq72101 132 4e-26 seq70036 129 5e-25 seq39745 87.8 2e-12 >seq72101 Length=85746 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583 ||||||||||||| |||| ||||| || || || ||| | |||||| ||| |||||| Sbjct 44648 AGAGAATCCCCGTCGATTCGTCATCTTCCCAATCCAATTCCAAGACATCTGGCTCATGTA 44589 Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAG 57643 ||| |||||||| || || || ||||| ||||| ||||| || ||||| ||||| || | Sbjct 44588 CAAGAAGGCAGAGGCGTCATTCTGGACAGTCGAGGAAGTGGATCTGTCCAAGGACATGGG 44529 Query 57644 CGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTT 57703 ||||||| ||||| | |||| | |||||| ||| |||||||| || || Sbjct 44528 TCATTGGGACAAGCTCAACAAGGACGAGAAGCACTTTATTTCACATGTGTTGGCCTTCTT 44469 Query 57704 CGCCGCATCCGATGGTATTGTTAACGAGAAT 57734 || || ||||| || |||||||||||| Sbjct 44468 TGCTGCCAGTGATGGCATCGTTAACGAGAAT 44438 >seq70036 Length=130556 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583 ||||||||||||| |||||||||| || || || ||| | |||||| ||| |||||| Sbjct 51397 AGAGAATCCCCGTCGATTTGTCATCTTCCCAATCCAATTCCAAGACATCTGGCTCATGTA 51456 Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAG 57643 ||| |||||||| || || || ||||| ||||| || || || ||||| ||||| || | Sbjct 51457 CAAGAAGGCAGAGGCGTCATTCTGGACAGTCGAGGAGGTGGATCTGTCCAAGGACATGGG 51516 Query 57644 CGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTT 57703 ||||||| ||||| | |||| | |||||| || ||||||||||| || Sbjct 51517 TCATTGGGACAAGCTCAACAAGGACGAGAAGCACTTTATTTCGCATGTGTTGGCGTTCTT 51576 Query 57704 CGCCGCATCCGATGGTATTGTTAACGAGAAT 57734 || || ||||| || || ||||||||| Sbjct 51577 TGCTGCCAGTGATGGCATCGTCAACGAGAAT 51607 >seq39745 Length=16847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || | ||| || ||||| | ||||||||| || ||||| || | ||| ||| Sbjct 4063 CATGAATAAATCTGGAATCCACATAGCGTAGAAAAGATCGCGAGCCCTGTTCTCTTCTGA 4004 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 |||||||||||||| ||||||| || || | | || |||||||| || || || || Sbjct 4003 TCCGGTGTTCTTTTTACAATCCAAGAACTCGTAGATATCTGCATGCCAAGGTTCAAGATA 3944 Query 23473 AACGGCAAACGCGCCCGGTCTCT 23495 | |||||| || || ||||||| Sbjct 3943 GATGGCAAAAGCACCGGGTCTCT 3921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445344615832320