Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq72101 138 1e-27 seq70036 138 1e-27 seq39745 89.7 6e-13 seq8201 89.7 6e-13 >seq72101 Length=85746 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 ||| || || || || ||||||||||| ||||| || ||||| |||||| ||||| | Sbjct 44438 ATTCTCGTTAACGATGCCATCACTGGCAGCAAAGAAGGCCAACACATGTGAAATAAAGTG 44497 Query 34028 TTTTTCGT-CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 34086 || |||| || || | || || | ||||| | || || || || | ||||||||| | Sbjct 44498 CTTCTCGTCCTTGT-TGAGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACTTCCT 44556 Query 34087 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGA 34146 | |||||||| ||||| ||||||||||| || ||||| ||||||||| || |||||| Sbjct 44557 CGACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGGA 44616 Query 34147 TTGGGAAAATAACAAATC 34164 ||||||| || || |||| Sbjct 44617 TTGGGAAGATGACGAATC 44634 >seq70036 Length=130556 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 ||| || || || || ||||||||||| ||||| |||||||| ||||| ||||| | Sbjct 51607 ATTCTCGTTGACGATGCCATCACTGGCAGCAAAGAACGCCAACACATGCGAAATAAAGTG 51548 Query 34028 TTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 34086 || ||||| |||| || || | ||||| | || || || || | |||||| || | Sbjct 51547 CTTCTCGTCCT-TGTTGAGCTTGTCCCAATGACCCATGTCCTTGGACAGATCCACCTCCT 51489 Query 34087 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGA 34146 | |||||||| ||||| ||||||||||| || ||||| ||||||||| || |||||| Sbjct 51488 CGACTGTCCAGAATGACGCCTCTGCCTTCTTGTACATGAGCCAGATGTCTTGGAATTGGA 51429 Query 34147 TTGGGAAAATAACAAATC 34164 ||||||| || ||||||| Sbjct 51428 TTGGGAAGATGACAAATC 51411 >seq39745 Length=16847 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| || ||| |||||||||||||||||||| ||||| ||||| | || ||||||||| Sbjct 5996 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 5937 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||||| | || || ||| || || || ||| | || | || || || | || | | Sbjct 5936 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCTGTCTCTACTTGGGCT 5877 Query 63108 TCTATAATCGCTTTCCA 63124 || || || |||||||| Sbjct 5876 TCAATGATTGCTTTCCA 5860 >seq8201 Length=93372 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| || ||| |||||||||||||||||||| ||||| ||||| | || ||||||||| Sbjct 62756 TATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTGATTA 62815 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||||| | || || ||| || || || ||| | || | || || || | || | | Sbjct 62816 CTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCCGTCTCTACTTGGGCT 62875 Query 63108 TCTATAATCGCTTTCCA 63124 || || || |||||||| Sbjct 62876 TCAATGATTGCTTTCCA 62892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629221666586880