Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq39745 116 3e-21 seq8201 111 1e-19 seq72101 82.4 7e-11 seq70036 82.4 7e-11 >seq39745 Length=16847 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || ||||| || | ||||||||||| || || ||||| || |||| ||||||| Sbjct 13300 ACCTGGAATTCTCCTGACAGCACTCTTCTTGTGTAGATGTTGCTGGTGTATGCTTCAATG 13241 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 | ||||| |||| | ||||| | || || ||||||||||| ||||||| ||| || Sbjct 13240 GCTTCATTGTTACCCAGGATTTGGGCGGTTGAGGCAGTAGGCATGGGTGCTAATAGTAGA 13181 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTC-TTTTTTAGTTCATTCCAATCCCATAAATC 37316 || || | | |||||| | || | |||| || || || ||| ||||| | || Sbjct 13180 CTGTTACGTACGCCATGTTTCTTGA-TCTCGGCCTTAAGGGCAGCCCAGTCCCAAAGGTC 13122 Query 37317 TGTTGGGTTCTTTAACCACATATCATATTGTAG 37349 ||||| |||| ||||||||||||||| || Sbjct 13121 AGTTGGAGTCTTACCCCACATATCATATTGCAG 13089 >seq8201 Length=93372 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || ||||| || | ||||||||||| || || ||||| || |||| ||||||| Sbjct 59148 ACCTGGAATTCTCCTGACAGCACTCTTCTTGTGTAGATGTTGCTGGTGTATGCTTCAATG 59207 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 | ||||| |||| | ||||| | || || ||||||||||| ||||||| ||| || Sbjct 59208 GCTTCATTGTTACCCAGGATTTGGGCGGTTGAGGCAGTAGGCATGGGTGCTAATAGTAGA 59267 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTC-TTTTTTAGTTCATTCCAATCCCATAAATC 37316 || || | | |||||| | || | |||| || || || ||| ||||| | || Sbjct 59268 CTGTTACGTACGCCATGTTTCTTGA-TCTCGGCCTTAAGGGCAGCCCAGTCCCAAAGGTC 59326 Query 37317 TGTTGGGTTCTTTAACCACATATCATATTGTAG 37349 ||||| |||| ||||||||| ||||| || Sbjct 59327 AGTTGGAGTCTTACCCCACATATCGTATTGCAG 59359 >seq72101 Length=85746 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | ||||| || || | ||||| || || ||||| || ||||| | || | | Sbjct 42101 AACCT-CATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCT 42159 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 | || | ||| || ||||||||||| ||||| || || || || ||||| ||||| || | Sbjct 42160 TCTTCAACCAGAAGATAGCAGCAAAGGAACCTGAGAAAAAGATGCCCTCGACAGCGGCGA 42219 Query 11769 ATGCTACTACTCTTTCTCCA 11788 | || || |||| ||| ||| Sbjct 42220 AAGCAACCACTCGTTCACCA 42239 >seq70036 Length=130556 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | ||||| || || | ||||| || || ||||| || ||||| | || | | Sbjct 53207 AACCT-CATCTCTGCTGATCAACTCATTGGAGAAAGTTAAACCTGGCATGACACCCCTCT 53149 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 | || | ||| || ||||||||||| ||||| || || || || ||||| ||||| || | Sbjct 53148 TCTTCAACCAGAAGATAGCAGCAAAGGAACCCGAGAAAAAGATGCCCTCGACAGCGGCGA 53089 Query 11769 ATGCTACTACTCTTTCTCCA 11788 | || || |||| ||| ||| Sbjct 53088 AAGCAACCACTCGTTCACCA 53069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468081481834240